PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20251-20300 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.8564 | 81.2500 | 91.0165 | 80.0283 | 390 | 90 | 385 | 38 | 24 | 63.1579 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 68.7222 | 62.9630 | 75.6410 | 66.6667 | 17 | 10 | 59 | 19 | 12 | 63.1579 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.3619 | 94.7826 | 91.9831 | 63.8720 | 218 | 12 | 218 | 19 | 12 | 63.1579 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0000 | 99.0847 | 98.9155 | 68.8533 | 1732 | 16 | 1733 | 19 | 12 | 63.1579 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.3078 | 82.7751 | 90.1554 | 73.0070 | 173 | 36 | 174 | 19 | 12 | 63.1579 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.6918 | 90.6694 | 88.7352 | 58.9619 | 447 | 46 | 449 | 57 | 36 | 63.1579 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.7777 | 98.5185 | 82.4615 | 65.1288 | 266 | 4 | 268 | 57 | 36 | 63.1579 | |
| gduggal-bwavard | INDEL | * | func_cds | * | 92.3991 | 93.2584 | 91.5556 | 46.3647 | 415 | 30 | 412 | 38 | 24 | 63.1579 | |
| gduggal-bwavard | INDEL | * | func_cds | het | 91.1447 | 98.5981 | 84.7390 | 55.3763 | 211 | 3 | 211 | 38 | 24 | 63.1579 | |
| ghariani-varprowl | SNP | tv | map_l125_m1_e0 | homalt | 98.8683 | 98.3959 | 99.3453 | 69.2128 | 5766 | 94 | 5766 | 38 | 24 | 63.1579 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e0 | homalt | 98.8811 | 98.4045 | 99.3623 | 71.6697 | 5921 | 96 | 5921 | 38 | 24 | 63.1579 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | homalt | 98.8833 | 98.4030 | 99.3682 | 71.6795 | 5977 | 97 | 5977 | 38 | 24 | 63.1579 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 89.7881 | 87.2659 | 92.4603 | 52.8972 | 233 | 34 | 233 | 19 | 12 | 63.1579 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002complexvar | het | 99.8096 | 99.7111 | 99.9084 | 56.0707 | 20705 | 60 | 20713 | 19 | 12 | 63.1579 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.7960 | 96.0049 | 99.6553 | 58.3497 | 5503 | 229 | 5493 | 19 | 12 | 63.1579 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6954 | 99.6733 | 99.7175 | 49.5386 | 6711 | 22 | 6707 | 19 | 12 | 63.1579 | |
| hfeng-pmm2 | INDEL | * | map_siren | homalt | 99.3610 | 99.4350 | 99.2871 | 79.4763 | 2640 | 15 | 2646 | 19 | 12 | 63.1579 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9808 | 97.2102 | 98.7638 | 71.4047 | 1568 | 45 | 1518 | 19 | 12 | 63.1579 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6118 | 99.3853 | 99.8394 | 49.0173 | 11802 | 73 | 11810 | 19 | 12 | 63.1579 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7367 | 99.6698 | 99.8037 | 67.8161 | 9660 | 32 | 9660 | 19 | 12 | 63.1579 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.8070 | 15.8537 | 40.6250 | 85.9649 | 13 | 69 | 13 | 19 | 12 | 63.1579 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | * | 94.2615 | 92.2652 | 96.3462 | 85.0575 | 501 | 42 | 501 | 19 | 12 | 63.1579 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5381 | 97.5357 | 97.5405 | 74.8248 | 1504 | 38 | 1507 | 38 | 24 | 63.1579 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0909 | 98.7850 | 99.3987 | 76.0252 | 6342 | 78 | 6282 | 38 | 24 | 63.1579 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0909 | 98.7850 | 99.3987 | 76.0252 | 6342 | 78 | 6282 | 38 | 24 | 63.1579 | |
| dgrover-gatk | SNP | * | HG002compoundhet | het | 99.7355 | 99.7390 | 99.7320 | 46.0622 | 14141 | 37 | 14139 | 38 | 24 | 63.1579 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4572 | 99.2298 | 99.6856 | 78.8294 | 6055 | 47 | 6025 | 19 | 12 | 63.1579 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0199 | 98.6449 | 99.3978 | 76.9388 | 6333 | 87 | 6272 | 38 | 24 | 63.1579 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0199 | 98.6449 | 99.3978 | 76.9388 | 6333 | 87 | 6272 | 38 | 24 | 63.1579 | |
| ckim-vqsr | SNP | tv | HG002compoundhet | het | 99.1184 | 98.6518 | 99.5894 | 55.9836 | 4610 | 63 | 4608 | 19 | 12 | 63.1579 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.4037 | 81.6845 | 89.4777 | 43.9514 | 29890 | 6702 | 33045 | 3886 | 2450 | 63.0468 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 79.4183 | 79.5592 | 79.2778 | 75.7467 | 51260 | 13170 | 51089 | 13354 | 8419 | 63.0448 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.4772 | 76.5586 | 84.8185 | 64.9306 | 307 | 94 | 257 | 46 | 29 | 63.0435 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.8462 | 99.3358 | 96.4006 | 82.8203 | 1346 | 9 | 1232 | 46 | 29 | 63.0435 | |
| hfeng-pmm1 | INDEL | I1_5 | HG002complexvar | * | 99.5778 | 99.2956 | 99.8615 | 56.6148 | 33128 | 235 | 33171 | 46 | 29 | 63.0435 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2284 | 98.8877 | 99.5715 | 51.9423 | 27648 | 311 | 27655 | 119 | 75 | 63.0252 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.2766 | 99.2958 | 76.2757 | 84.3842 | 846 | 6 | 852 | 265 | 167 | 63.0189 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.1220 | 76.2376 | 74.0385 | 94.4710 | 77 | 24 | 77 | 27 | 17 | 62.9630 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3872 | 99.0063 | 99.7710 | 48.5556 | 11757 | 118 | 11762 | 27 | 17 | 62.9630 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.5570 | 79.7101 | 92.3295 | 70.6177 | 330 | 84 | 325 | 27 | 17 | 62.9630 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.3602 | 96.1713 | 98.5789 | 73.8003 | 1482 | 59 | 1873 | 27 | 17 | 62.9630 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002complexvar | * | 99.1020 | 98.6275 | 99.5810 | 54.4390 | 32266 | 449 | 32088 | 135 | 85 | 62.9630 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | * | 99.1938 | 98.8812 | 99.5083 | 54.2253 | 32349 | 366 | 32179 | 159 | 100 | 62.8931 | |
| jpowers-varprowl | SNP | * | map_l100_m0_e0 | homalt | 98.9071 | 98.1325 | 99.6940 | 66.9212 | 11403 | 217 | 11403 | 35 | 22 | 62.8571 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.0578 | 96.0317 | 98.1061 | 87.2243 | 1694 | 70 | 1813 | 35 | 22 | 62.8571 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.7431 | 89.6335 | 96.0762 | 74.1823 | 856 | 99 | 857 | 35 | 22 | 62.8571 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.8232 | 94.3471 | 91.3476 | 73.3415 | 1185 | 71 | 1193 | 113 | 71 | 62.8319 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 82.9391 | 77.0624 | 89.7862 | 73.3037 | 383 | 114 | 378 | 43 | 27 | 62.7907 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | het | 97.8098 | 97.8351 | 97.7846 | 87.2638 | 1898 | 42 | 1898 | 43 | 27 | 62.7907 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.2713 | 95.1718 | 99.4655 | 60.8421 | 8003 | 406 | 8002 | 43 | 27 | 62.7907 | |