PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19251-19300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | * | decoy | het | 63.4921 | 50.0000 | 86.9565 | 99.7259 | 3 | 3 | 20 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1209 | 1.5974 | 67.3913 | 86.5889 | 20 | 1232 | 31 | 15 | 10 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | hetalt | 58.2726 | 42.4242 | 93.0233 | 93.1746 | 14 | 19 | 40 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | het | 96.1706 | 95.7494 | 96.5955 | 81.6758 | 2140 | 95 | 2894 | 102 | 68 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | * | 96.1728 | 96.0725 | 96.2733 | 98.1347 | 318 | 13 | 465 | 18 | 12 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | * | 96.1961 | 96.0961 | 96.2963 | 98.2219 | 320 | 13 | 468 | 18 | 12 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 66.6667 | 93.2331 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 94.1349 | 0 | 0 | 8 | 12 | 8 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 92.4242 | 0 | 0 | 6 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 70.0000 | 92.5373 | 0 | 0 | 7 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | HG002complexvar | het | 91.4751 | 85.7143 | 98.0661 | 74.9495 | 6 | 1 | 1217 | 24 | 16 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 70.0000 | 93.8272 | 0 | 0 | 7 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 94.2308 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 33.3333 | 91.2621 | 0 | 0 | 3 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 97.7444 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6170 | 100.0000 | 88.0000 | 95.8882 | 1 | 0 | 44 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 92.8571 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 94.2060 | 0 | 0 | 18 | 36 | 24 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 88.4615 | 0 | 0 | 0 | 12 | 8 | 66.6667 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.7339 | 69.2913 | 96.7033 | 44.5122 | 88 | 39 | 88 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 72.7273 | 100.0000 | 57.1429 | 99.9868 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 72.7273 | 100.0000 | 57.1429 | 99.7676 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 91.8919 | 86.2944 | 98.2659 | 34.2205 | 170 | 27 | 170 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 86.6039 | 84.2520 | 89.0909 | 56.0000 | 107 | 20 | 98 | 12 | 8 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 84.5899 | 76.6667 | 94.3396 | 70.0565 | 46 | 14 | 50 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | map_siren | hetalt | 85.4934 | 76.7857 | 96.4286 | 82.2410 | 86 | 26 | 81 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | segdup | * | 97.2169 | 95.6563 | 98.8293 | 93.2182 | 1013 | 46 | 1013 | 12 | 8 | 66.6667 | |
| ckim-isaac | INDEL | I6_15 | map_siren | * | 63.4176 | 46.8852 | 97.9592 | 84.2105 | 143 | 162 | 144 | 3 | 2 | 66.6667 | |
| ckim-isaac | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.1734 | 94.6284 | 99.8591 | 48.1340 | 19114 | 1085 | 19138 | 27 | 18 | 66.6667 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.6065 | 77.2727 | 93.4783 | 86.4507 | 85 | 25 | 86 | 6 | 4 | 66.6667 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.4383 | 94.0202 | 98.9840 | 57.6608 | 2044 | 130 | 2046 | 21 | 14 | 66.6667 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.8495 | 82.0513 | 99.2857 | 77.1491 | 416 | 91 | 417 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0288 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | homalt | 97.8873 | 97.8873 | 97.8873 | 88.7703 | 278 | 6 | 278 | 6 | 4 | 66.6667 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | homalt | 96.2963 | 95.4128 | 97.1963 | 95.1496 | 104 | 5 | 104 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | homalt | 96.4912 | 95.6522 | 97.3451 | 95.5424 | 110 | 5 | 110 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | homalt | 96.5217 | 95.6897 | 97.3684 | 95.6322 | 111 | 5 | 111 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.0391 | 99.4096 | 96.7059 | 82.8744 | 1347 | 8 | 1233 | 42 | 28 | 66.6667 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 71.6889 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 64.9289 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2332 | 96.8504 | 97.6190 | 79.0698 | 123 | 4 | 123 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6017 | 99.5025 | 99.7012 | 65.7688 | 1000 | 5 | 1001 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6526 | 99.6524 | 99.6528 | 63.6057 | 860 | 3 | 861 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.7273 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.6602 | 96.7890 | 98.5472 | 85.8707 | 422 | 14 | 407 | 6 | 4 | 66.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4939 | 96.6013 | 98.4032 | 85.1394 | 1478 | 52 | 1479 | 24 | 16 | 66.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.4939 | 96.6013 | 98.4032 | 85.1394 | 1478 | 52 | 1479 | 24 | 16 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.2609 | 99.1228 | 97.4138 | 85.9564 | 113 | 1 | 113 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 83.5088 | 326 | 1 | 326 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 84.7216 | 340 | 1 | 340 | 3 | 2 | 66.6667 | |