PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18951-19000 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | * | 22.9885 | 13.3333 | 83.3333 | 81.4433 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | het | 35.0877 | 22.2222 | 83.3333 | 81.0526 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | * | 22.9885 | 13.3333 | 83.3333 | 81.6327 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | het | 35.0877 | 22.2222 | 83.3333 | 81.2500 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | * | 4.4800 | 2.3256 | 60.8696 | 78.5047 | 2 | 84 | 28 | 18 | 12 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | het | 68.5714 | 70.5882 | 66.6667 | 94.3750 | 12 | 5 | 12 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 50.0000 | 44.4444 | 57.1429 | 96.9957 | 4 | 5 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.8326 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.3958 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | * | 46.1538 | 42.8571 | 50.0000 | 97.7358 | 3 | 4 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.8541 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | * | 53.3333 | 50.0000 | 57.1429 | 97.7049 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | het | 54.5455 | 60.0000 | 50.0000 | 97.7941 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 53.3333 | 50.0000 | 57.1429 | 97.7987 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 54.5455 | 60.0000 | 50.0000 | 97.8873 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9631 | 100.0000 | 97.9475 | 55.8853 | 858 | 0 | 859 | 18 | 12 | 66.6667 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | homalt | 98.9754 | 98.1605 | 99.8038 | 62.7769 | 7631 | 143 | 7631 | 15 | 10 | 66.6667 | |
| ghariani-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3468 | 96.9576 | 99.7764 | 75.9674 | 2677 | 84 | 2677 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7680 | 100.0000 | 97.5659 | 60.0486 | 481 | 0 | 481 | 12 | 8 | 66.6667 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | homalt | 99.1131 | 98.8610 | 99.3665 | 64.2948 | 8940 | 103 | 8940 | 57 | 38 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9045 | 95.9136 | 99.9799 | 60.6514 | 14787 | 630 | 14905 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7612 | 99.6819 | 99.8407 | 71.1771 | 1880 | 6 | 1880 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6600 | 95.4525 | 99.9719 | 30.6839 | 10600 | 505 | 10680 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6959 | 95.5227 | 99.9703 | 33.3773 | 10006 | 469 | 10089 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4941 | 94.2149 | 96.8085 | 80.8641 | 912 | 56 | 819 | 27 | 18 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4001 | 93.6937 | 97.1698 | 60.5948 | 208 | 14 | 206 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 93.9879 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 94.5523 | 112 | 3 | 112 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 94.6445 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | homalt | 95.6005 | 92.2018 | 99.2593 | 96.2789 | 402 | 34 | 402 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 65.3917 | 49.9065 | 94.8097 | 85.3076 | 267 | 268 | 274 | 15 | 10 | 66.6667 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 34.4828 | 23.2558 | 66.6667 | 81.2500 | 10 | 33 | 6 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 32.9670 | 22.7273 | 60.0000 | 98.0964 | 10 | 34 | 9 | 6 | 4 | 66.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.2378 | 37.7049 | 85.0000 | 51.2195 | 23 | 38 | 17 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 7.1429 | 4.1667 | 25.0000 | 86.6667 | 1 | 23 | 1 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | SNP | ti | segdup | homalt | 99.4715 | 99.0673 | 99.8790 | 87.9842 | 7435 | 70 | 7429 | 9 | 6 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 56.0510 | 55.0000 | 57.1429 | 99.8789 | 11 | 9 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 64.8649 | 75.0000 | 57.1429 | 99.8626 | 9 | 3 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.6897 | 64.7059 | 57.1429 | 99.8738 | 11 | 6 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 69.9029 | 90.0000 | 57.1429 | 99.8562 | 9 | 1 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.2235 | 84.1085 | 97.2973 | 61.2565 | 217 | 41 | 216 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 97.9522 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.5904 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 72.7273 | 72.7273 | 72.7273 | 82.8125 | 8 | 3 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 84.2105 | 100.0000 | 72.7273 | 81.0345 | 8 | 0 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | * | 66.6667 | 61.5385 | 72.7273 | 84.7222 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 83.7209 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | * | 66.6667 | 61.5385 | 72.7273 | 86.8263 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 86.0000 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | * | 66.6667 | 61.5385 | 72.7273 | 86.9048 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |