PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18651-18700 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.7873 | 98.1180 | 99.4657 | 52.4428 | 15745 | 302 | 15637 | 84 | 58 | 69.0476 | |
| ndellapenna-hhga | INDEL | I16_PLUS | * | * | 92.8570 | 90.4814 | 95.3607 | 63.8712 | 5770 | 607 | 5776 | 281 | 194 | 69.0391 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | * | 64.0905 | 62.4141 | 65.8596 | 60.8283 | 817 | 492 | 816 | 423 | 292 | 69.0307 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 77.5367 | 69.6429 | 87.4488 | 64.9114 | 1248 | 544 | 1282 | 184 | 127 | 69.0217 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 68.4671 | 69.3780 | 67.5799 | 76.7516 | 145 | 64 | 148 | 71 | 49 | 69.0141 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.3866 | 96.7594 | 96.0167 | 76.6953 | 4837 | 162 | 4821 | 200 | 138 | 69.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.3866 | 96.7594 | 96.0167 | 76.6953 | 4837 | 162 | 4821 | 200 | 138 | 69.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7091 | 96.6601 | 98.7812 | 70.7632 | 29462 | 1018 | 29015 | 358 | 247 | 68.9944 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7091 | 96.6601 | 98.7812 | 70.7632 | 29462 | 1018 | 29015 | 358 | 247 | 68.9944 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3238 | 96.5464 | 96.1023 | 63.4311 | 27284 | 976 | 27270 | 1106 | 763 | 68.9873 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 77.9189 | 77.3944 | 78.4506 | 71.4753 | 2804 | 819 | 2876 | 790 | 545 | 68.9873 | |
| egarrison-hhga | INDEL | * | map_siren | homalt | 98.7934 | 98.6817 | 98.9052 | 79.7136 | 2620 | 35 | 2620 | 29 | 20 | 68.9655 | |
| jlack-gatk | INDEL | D6_15 | HG002complexvar | het | 98.1096 | 98.1090 | 98.1101 | 59.2917 | 3061 | 59 | 3011 | 58 | 40 | 68.9655 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.4386 | 95.2569 | 97.6499 | 83.7824 | 1205 | 60 | 1205 | 29 | 20 | 68.9655 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.4196 | 95.2703 | 93.5841 | 72.6227 | 423 | 21 | 423 | 29 | 20 | 68.9655 | |
| anovak-vg | INDEL | I6_15 | HG002compoundhet | homalt | 34.1743 | 61.2903 | 23.6923 | 35.6011 | 19 | 12 | 231 | 744 | 513 | 68.9516 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 70.6464 | 66.6133 | 75.1993 | 63.7444 | 832 | 417 | 849 | 280 | 193 | 68.9286 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 70.6464 | 66.6133 | 75.1993 | 63.7444 | 832 | 417 | 849 | 280 | 193 | 68.9286 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e0 | * | 99.3062 | 99.1044 | 99.5088 | 70.7721 | 29987 | 271 | 29983 | 148 | 102 | 68.9189 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e1 | * | 99.3100 | 99.1069 | 99.5138 | 70.8133 | 30296 | 273 | 30292 | 148 | 102 | 68.9189 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3079 | 97.1210 | 99.5241 | 52.9586 | 15585 | 462 | 15476 | 74 | 51 | 68.9189 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 58.8731 | 57.9621 | 59.8131 | 41.7312 | 1132 | 821 | 1216 | 817 | 563 | 68.9106 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 70.3858 | 62.2960 | 80.8903 | 55.0300 | 6452 | 3905 | 7814 | 1846 | 1272 | 68.9057 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 2.7557 | 1.4642 | 23.3645 | 66.5102 | 47 | 3163 | 50 | 164 | 113 | 68.9024 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 4.1479 | 2.2831 | 22.6415 | 66.0800 | 20 | 856 | 48 | 164 | 113 | 68.9024 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 88.4979 | 97.7029 | 80.8780 | 52.7675 | 638 | 15 | 2174 | 514 | 354 | 68.8716 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.0622 | 99.8912 | 96.2989 | 47.9935 | 2755 | 3 | 2758 | 106 | 73 | 68.8679 | |
| gduggal-bwavard | SNP | ti | HG002complexvar | * | 98.2991 | 97.1039 | 99.5241 | 18.2603 | 493712 | 14725 | 485576 | 2322 | 1599 | 68.8630 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 52.0117 | 48.8701 | 55.5851 | 61.8274 | 173 | 181 | 209 | 167 | 115 | 68.8623 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 42.9780 | 30.8511 | 70.8134 | 48.1390 | 145 | 325 | 592 | 244 | 168 | 68.8525 | |
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | het | 65.7371 | 54.8329 | 82.0546 | 48.1457 | 607 | 500 | 631 | 138 | 95 | 68.8406 | |
| asubramanian-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.7949 | 99.4246 | 98.1731 | 74.1057 | 30584 | 177 | 31383 | 584 | 402 | 68.8356 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | het | 76.3802 | 83.3333 | 70.4981 | 82.9300 | 105 | 21 | 184 | 77 | 53 | 68.8312 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1082 | 88.4268 | 98.3131 | 60.7196 | 5379 | 704 | 5420 | 93 | 64 | 68.8172 | |
| ckim-isaac | INDEL | D1_5 | * | het | 97.9869 | 97.6340 | 98.3423 | 46.0249 | 85502 | 2072 | 85013 | 1433 | 986 | 68.8067 | |
| ghariani-varprowl | INDEL | D1_5 | HG002complexvar | het | 95.4621 | 98.5649 | 92.5488 | 58.7032 | 20467 | 298 | 20407 | 1643 | 1130 | 68.7766 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6409 | 98.1777 | 97.1099 | 61.1163 | 9913 | 184 | 10114 | 301 | 207 | 68.7708 | |
| ciseli-custom | INDEL | * | segdup | * | 85.0497 | 84.0767 | 86.0456 | 94.6455 | 2149 | 407 | 2152 | 349 | 240 | 68.7679 | |
| gduggal-bwaplat | INDEL | D6_15 | * | * | 86.9684 | 78.1121 | 98.0899 | 65.2244 | 20381 | 5711 | 20387 | 397 | 273 | 68.7657 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 61.5021 | 60.6742 | 62.3529 | 71.9472 | 54 | 35 | 53 | 32 | 22 | 68.7500 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.4853 | 92.4528 | 60.9756 | 70.1818 | 49 | 4 | 50 | 32 | 22 | 68.7500 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.9960 | 97.6240 | 96.3760 | 83.1102 | 945 | 23 | 851 | 32 | 22 | 68.7500 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1727 | 98.8666 | 99.4807 | 69.4042 | 3053 | 35 | 3065 | 16 | 11 | 68.7500 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7299 | 97.1074 | 96.3554 | 83.0174 | 940 | 28 | 846 | 32 | 22 | 68.7500 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3027 | 98.3993 | 98.2063 | 71.9673 | 3504 | 57 | 3504 | 64 | 44 | 68.7500 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2162 | 95.0172 | 99.5194 | 52.2792 | 3318 | 174 | 3313 | 16 | 11 | 68.7500 | |
| jli-custom | SNP | tv | HG002complexvar | homalt | 99.9542 | 99.9254 | 99.9832 | 22.8543 | 95040 | 71 | 95029 | 16 | 11 | 68.7500 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7273 | 99.7114 | 99.7433 | 70.7941 | 6218 | 18 | 6218 | 16 | 11 | 68.7500 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.9967 | 89.0226 | 97.3422 | 75.0725 | 592 | 73 | 586 | 16 | 11 | 68.7500 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9007 | 95.1331 | 98.7352 | 48.1982 | 1251 | 64 | 1249 | 16 | 11 | 68.7500 | |