PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18201-18250 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | homalt | 98.2517 | 98.9437 | 97.5694 | 89.3570 | 281 | 3 | 281 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | homalt | 98.1354 | 96.6740 | 99.6417 | 77.0204 | 3953 | 136 | 3893 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | SNP | * | map_l250_m0_e0 | homalt | 97.3310 | 95.8665 | 98.8411 | 92.8933 | 603 | 26 | 597 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | homalt | 98.6984 | 97.6079 | 99.8135 | 64.7875 | 3754 | 92 | 3747 | 7 | 5 | 71.4286 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 68.1818 | 0 | 0 | 0 | 7 | 5 | 71.4286 | ||
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.0000 | 65.0000 | 65.0000 | 99.6383 | 13 | 7 | 13 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 77.4194 | 100.0000 | 63.1579 | 99.6078 | 12 | 0 | 12 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.0875 | 71.7742 | 80.9524 | 99.8808 | 89 | 35 | 119 | 28 | 20 | 71.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.4440 | 85.0575 | 78.1250 | 99.8790 | 74 | 13 | 100 | 28 | 20 | 71.4286 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | homalt | 99.4020 | 98.9863 | 99.8211 | 73.3556 | 3906 | 40 | 3906 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | homalt | 99.4097 | 98.9958 | 99.8271 | 75.2959 | 4042 | 41 | 4042 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | homalt | 99.4171 | 99.0082 | 99.8293 | 75.3205 | 4093 | 41 | 4093 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.1860 | 98.0620 | 96.3255 | 87.0584 | 253 | 5 | 367 | 14 | 10 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 86.7925 | 100.0000 | 76.6667 | 97.8198 | 1 | 0 | 23 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 53.3333 | 97.0472 | 0 | 0 | 8 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 86.7925 | 100.0000 | 76.6667 | 97.7578 | 1 | 0 | 23 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 53.3333 | 97.0238 | 0 | 0 | 8 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | * | 82.7852 | 75.7576 | 91.2500 | 78.7798 | 25 | 8 | 73 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | het | 72.5049 | 63.3333 | 84.7826 | 81.8182 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | het | 72.5049 | 63.3333 | 84.7826 | 83.2117 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | het | 72.5049 | 63.3333 | 84.7826 | 83.5125 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m1_e0 | * | 80.6885 | 80.8219 | 80.5556 | 93.5252 | 59 | 14 | 58 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m1_e0 | het | 84.7826 | 100.0000 | 73.5849 | 94.5697 | 39 | 0 | 39 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | * | 82.8213 | 82.9268 | 82.7160 | 93.4835 | 68 | 14 | 67 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | het | 86.7925 | 100.0000 | 76.6667 | 94.4954 | 46 | 0 | 46 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 47.7477 | 40.9794 | 57.1942 | 72.9835 | 159 | 229 | 159 | 119 | 85 | 71.4286 | |
| gduggal-bwavard | INDEL | I1_5 | HG002complexvar | homalt | 96.0632 | 92.4747 | 99.9414 | 32.6716 | 12436 | 1012 | 11931 | 7 | 5 | 71.4286 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3559 | 99.2492 | 99.4628 | 72.8768 | 1322 | 10 | 1296 | 7 | 5 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l150_m1_e0 | homalt | 99.5103 | 99.1484 | 99.8749 | 68.8906 | 11177 | 96 | 11177 | 14 | 10 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.5153 | 99.1538 | 99.8795 | 71.2083 | 11600 | 99 | 11600 | 14 | 10 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l150_m2_e1 | homalt | 99.5206 | 99.1629 | 99.8808 | 71.2164 | 11728 | 99 | 11728 | 14 | 10 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l250_m1_e0 | homalt | 98.9982 | 98.2948 | 99.7117 | 85.6084 | 2421 | 42 | 2421 | 7 | 5 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l250_m2_e0 | homalt | 99.0440 | 98.3619 | 99.7357 | 86.6145 | 2642 | 44 | 2642 | 7 | 5 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l250_m2_e1 | homalt | 99.0554 | 98.3812 | 99.7389 | 86.6637 | 2674 | 44 | 2674 | 7 | 5 | 71.4286 | |
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | homalt | 99.4074 | 98.9757 | 99.8428 | 67.2382 | 4445 | 46 | 4445 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | * | segdup | het | 97.9069 | 98.6357 | 97.1888 | 94.2947 | 1446 | 20 | 1452 | 42 | 30 | 71.4286 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5138 | 97.4194 | 95.6250 | 82.3982 | 151 | 4 | 153 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | * | 92.4953 | 90.6250 | 94.4444 | 89.0720 | 116 | 12 | 119 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.9433 | 88.0000 | 76.6667 | 85.7820 | 22 | 3 | 23 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.9712 | 94.0678 | 97.9532 | 66.6016 | 333 | 21 | 335 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 91.5332 | 92.5926 | 90.4977 | 62.7319 | 200 | 16 | 200 | 21 | 15 | 71.4286 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.2202 | 78.4416 | 78.0000 | 61.1973 | 302 | 83 | 273 | 77 | 55 | 71.4286 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 83.2773 | 71.8970 | 98.9378 | 35.0419 | 1228 | 480 | 1304 | 14 | 10 | 71.4286 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 68.3908 | 54.5894 | 91.5323 | 59.3443 | 226 | 188 | 227 | 21 | 15 | 71.4286 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 70.1745 | 56.1567 | 93.5185 | 58.4615 | 301 | 235 | 303 | 21 | 15 | 71.4286 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7617 | 99.8940 | 99.6298 | 72.7247 | 1884 | 2 | 1884 | 7 | 5 | 71.4286 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8792 | 99.4987 | 98.2673 | 65.6463 | 397 | 2 | 397 | 7 | 5 | 71.4286 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5135 | 99.4812 | 99.5457 | 78.2406 | 1534 | 8 | 1534 | 7 | 5 | 71.4286 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0995 | 99.3432 | 94.9550 | 83.9270 | 605 | 4 | 527 | 28 | 20 | 71.4286 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.4656 | 94.7248 | 98.2716 | 85.9667 | 413 | 23 | 398 | 7 | 5 | 71.4286 | |