PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18101-18150 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | * | func_cds | * | 99.4453 | 99.2617 | 99.6295 | 19.0809 | 18016 | 134 | 18016 | 67 | 48 | 71.6418 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1889 | 97.3395 | 97.0388 | 75.6563 | 4866 | 133 | 4850 | 148 | 106 | 71.6216 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1889 | 97.3395 | 97.0388 | 75.6563 | 4866 | 133 | 4850 | 148 | 106 | 71.6216 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 35.5104 | 33.6851 | 37.5449 | 56.5557 | 415 | 817 | 627 | 1043 | 747 | 71.6203 | |
| qzeng-custom | SNP | * | map_siren | * | 92.3867 | 86.6004 | 99.0016 | 63.6130 | 126634 | 19594 | 125047 | 1261 | 903 | 71.6098 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.0853 | 96.5607 | 99.6588 | 36.0406 | 23696 | 844 | 23662 | 81 | 58 | 71.6049 | |
| anovak-vg | INDEL | D1_5 | HG002compoundhet | * | 38.6407 | 34.4667 | 43.9649 | 65.5035 | 4217 | 8018 | 4859 | 6193 | 4434 | 71.5970 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | homalt | 82.1383 | 80.2173 | 84.1537 | 87.5709 | 1403 | 346 | 1402 | 264 | 189 | 71.5909 | |
| gduggal-bwafb | INDEL | * | * | het | 97.2465 | 95.6571 | 98.8897 | 54.7010 | 185702 | 8431 | 212773 | 2389 | 1710 | 71.5781 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 46.6061 | 61.8182 | 37.4023 | 55.7713 | 238 | 147 | 622 | 1041 | 745 | 71.5658 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | homalt | 20.9157 | 83.3333 | 11.9586 | 45.5385 | 20 | 4 | 127 | 935 | 669 | 71.5508 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.4351 | 94.7749 | 98.1545 | 42.9464 | 6548 | 361 | 6542 | 123 | 88 | 71.5447 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2689 | 97.4195 | 97.1188 | 75.1529 | 4870 | 129 | 4854 | 144 | 103 | 71.5278 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2689 | 97.4195 | 97.1188 | 75.1529 | 4870 | 129 | 4854 | 144 | 103 | 71.5278 | |
| egarrison-hhga | INDEL | * | HG002complexvar | het | 97.6548 | 97.3665 | 97.9448 | 54.4695 | 44995 | 1217 | 44989 | 944 | 675 | 71.5042 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3939 | 98.8110 | 96.0169 | 66.9230 | 17950 | 216 | 18586 | 771 | 551 | 71.4656 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.3939 | 98.8110 | 96.0169 | 66.9230 | 17950 | 216 | 18586 | 771 | 551 | 71.4656 | |
| anovak-vg | INDEL | D6_15 | * | homalt | 75.9353 | 71.8780 | 80.4782 | 54.2097 | 4547 | 1779 | 4679 | 1135 | 811 | 71.4537 | |
| ciseli-custom | INDEL | I1_5 | HG002complexvar | het | 88.5454 | 89.7735 | 87.3504 | 57.1664 | 16328 | 1860 | 16352 | 2368 | 1692 | 71.4527 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 43.8881 | 34.0206 | 61.8182 | 89.1304 | 33 | 64 | 34 | 21 | 15 | 71.4286 | |
| ciseli-custom | INDEL | I1_5 | segdup | het | 90.6052 | 93.4944 | 87.8893 | 95.0934 | 503 | 35 | 508 | 70 | 50 | 71.4286 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4089 | 99.5877 | 99.2308 | 76.0442 | 48072 | 199 | 47859 | 371 | 265 | 71.4286 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7617 | 99.8940 | 99.6298 | 72.7247 | 1884 | 2 | 1884 | 7 | 5 | 71.4286 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8792 | 99.4987 | 98.2673 | 65.6463 | 397 | 2 | 397 | 7 | 5 | 71.4286 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6571 | 96.7320 | 98.6000 | 85.4100 | 1480 | 50 | 1479 | 21 | 15 | 71.4286 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6571 | 96.7320 | 98.6000 | 85.4100 | 1480 | 50 | 1479 | 21 | 15 | 71.4286 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9932 | 98.5767 | 99.4132 | 76.4066 | 2424 | 35 | 2372 | 14 | 10 | 71.4286 | |
| ckim-dragen | INDEL | I1_5 | map_siren | homalt | 99.2562 | 99.0924 | 99.4205 | 77.9401 | 1201 | 11 | 1201 | 7 | 5 | 71.4286 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | homalt | 97.6982 | 98.9637 | 96.4646 | 90.7993 | 191 | 2 | 191 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.0342 | 91.9149 | 98.3726 | 47.9336 | 1296 | 114 | 2962 | 49 | 35 | 71.4286 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3136 | 99.0921 | 99.5361 | 73.0198 | 1528 | 14 | 1502 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1585 | 96.0784 | 98.2630 | 83.6495 | 1470 | 60 | 1584 | 28 | 20 | 71.4286 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1585 | 96.0784 | 98.2630 | 83.6495 | 1470 | 60 | 1584 | 28 | 20 | 71.4286 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3377 | 96.0417 | 98.6692 | 81.4984 | 461 | 19 | 519 | 7 | 5 | 71.4286 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | homalt | 98.3678 | 98.1707 | 98.5656 | 89.0998 | 483 | 9 | 481 | 7 | 5 | 71.4286 | |
| ciseli-custom | INDEL | * | map_l125_m0_e0 | homalt | 64.5934 | 55.9859 | 76.3285 | 90.4255 | 159 | 125 | 158 | 49 | 35 | 71.4286 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4268 | 75.9398 | 85.4772 | 80.3586 | 202 | 64 | 206 | 35 | 25 | 71.4286 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | het | 77.9618 | 85.0000 | 72.0000 | 93.6869 | 17 | 3 | 18 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | map_l250_m1_e0 | homalt | 84.7951 | 73.9266 | 99.4103 | 87.1481 | 1188 | 419 | 1180 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | homalt | 85.1522 | 74.4425 | 99.4611 | 88.0122 | 1302 | 447 | 1292 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | homalt | 85.1502 | 74.4357 | 99.4681 | 88.0298 | 1319 | 453 | 1309 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6861 | 95.4198 | 95.9538 | 64.2562 | 500 | 24 | 498 | 21 | 15 | 71.4286 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7617 | 99.8940 | 99.6298 | 72.6774 | 1884 | 2 | 1884 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | * | 96.6887 | 95.7377 | 97.6589 | 84.7837 | 292 | 13 | 292 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | SNP | * | map_l125_m0_e0 | homalt | 99.5370 | 99.2849 | 99.7904 | 67.2503 | 6664 | 48 | 6664 | 14 | 10 | 71.4286 | |
| bgallagher-sentieon | SNP | * | map_l250_m0_e0 | homalt | 98.8067 | 98.7281 | 98.8854 | 91.2693 | 621 | 8 | 621 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | homalt | 99.6318 | 99.4425 | 99.8219 | 68.7396 | 3924 | 22 | 3924 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | homalt | 99.6442 | 99.4612 | 99.8279 | 71.1244 | 4061 | 22 | 4061 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e1 | homalt | 99.6486 | 99.4678 | 99.8301 | 71.0988 | 4112 | 22 | 4112 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.0808 | 82.0000 | 97.5000 | 46.5649 | 41 | 9 | 273 | 7 | 5 | 71.4286 | |