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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 356 357 358 359 360 361 362 363 364 ... 1720 1721 » 17951-18000 / 86044 show all
qzeng-custom	INDEL	*	HG002compoundhet	hetalt	86.4434	76.5369	99.2955	48.8192	19272	5908	5638	40	29	72.5000
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	72.9167	73.4266	72.4138	93.7392	105	38	105	40	29	72.5000
hfeng-pmm3	INDEL	I6_15	*	het	98.8597	98.1362	99.5939	56.2294	9846	187	9811	40	29	72.5000
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	43.3697	38.1944	50.1672	54.4901	110	178	300	298	216	72.4832
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	93.3178	93.0147	93.6229	58.8750	1012	76	1013	69	50	72.4638
ckim-isaac	SNP	*	*	homalt	98.3805	96.8182	99.9940	14.4545	1142612	37550	1142668	69	50	72.4638
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	78.6812	70.0218	89.7846	52.4533	2567	1099	2584	294	213	72.4490
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	95.4186	95.3591	95.4783	74.6523	4767	232	4751	225	163	72.4444
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	95.4186	95.3591	95.4783	74.6523	4767	232	4751	225	163	72.4444
mlin-fermikit	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.9901	97.8124	98.1685	60.1939	54414	1217	54457	1016	736	72.4409
anovak-vg	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	75.7760	77.8397	73.8189	67.4300	37574	10697	51936	18420	13343	72.4376
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	81.7029	86.3636	77.5194	87.8531	95	15	100	29	21	72.4138
mlin-fermikit	INDEL	*	map_l250_m2_e0	*	53.6585	39.8792	81.9876	92.9540	132	199	132	29	21	72.4138
mlin-fermikit	INDEL	*	map_l250_m2_e1	*	53.7374	39.9399	82.0988	93.1530	133	200	133	29	21	72.4138
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	72.7369	58.3764	96.4677	87.8568	791	564	792	29	21	72.4138
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	87.8760	79.8693	97.6669	68.5714	1222	308	1214	29	21	72.4138
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	87.8760	79.8693	97.6669	68.5714	1222	308	1214	29	21	72.4138
jpowers-varprowl	INDEL	I1_5	map_l125_m2_e1	*	94.1730	91.9540	96.5018	87.3047	800	70	800	29	21	72.4138
gduggal-snapvard	INDEL	C6_15	*	homalt	0.0000	0.0000	69.1489	89.5439	0	0	65	29	21	72.4138
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	24.3587	15.4953	56.9132	61.6995	183	998	177	134	97	72.3881
cchapple-custom	SNP	ti	HG002complexvar	het	99.7945	99.6988	99.8903	17.3501	313818	948	313318	344	249	72.3837
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	89.2573	89.3506	89.1641	59.4561	344	41	864	105	76	72.3810
egarrison-hhga	INDEL	I16_PLUS	*	homalt	93.8558	94.3626	93.3544	58.5193	1473	88	1475	105	76	72.3810
ndellapenna-hhga	SNP	tv	HG002complexvar	*	99.7569	99.5881	99.9262	21.8704	245138	1014	245164	181	131	72.3757
egarrison-hhga	INDEL	*	HG002complexvar	*	97.4540	96.9352	97.9784	67.1267	74580	2358	74541	1538	1113	72.3667
anovak-vg	INDEL	D6_15	HG002complexvar	homalt	78.9062	82.4636	75.6430	56.5846	964	205	1000	322	233	72.3602
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	76.0027	83.0403	70.0649	36.4124	8642	1765	11127	4754	3440	72.3601
jpowers-varprowl	INDEL	I1_5	map_l100_m2_e0	*	93.8073	91.3743	96.3735	84.4642	1250	118	1249	47	34	72.3404
ltrigg-rtg2	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	95.4464	92.3899	98.7120	46.6442	3630	299	3602	47	34	72.3404
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	57.4030	44.5498	80.6804	63.6484	1410	1755	1328	318	230	72.3270
ciseli-custom	SNP	ti	map_l250_m2_e1	homalt	82.2049	80.4740	84.0118	87.5404	1426	346	1424	271	196	72.3247
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	92.9602	93.1759	92.7455	64.5850	710	52	831	65	47	72.3077
qzeng-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	71.1805	93.4426	57.4850	70.1252	114	8	288	213	154	72.3005
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	77.4069	76.4295	78.4096	44.8000	9076	2799	9239	2544	1839	72.2877
jpowers-varprowl	SNP	ti	HG002complexvar	homalt	99.7216	99.9488	99.4954	19.7390	193364	99	193412	981	709	72.2732
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	81.2064	88.9071	74.7333	41.7707	5971	745	6655	2250	1626	72.2667
gduggal-snapvard	INDEL	I1_5	HG002complexvar	het	90.2347	95.7007	85.3594	58.5913	17407	782	17730	3041	2197	72.2460
ciseli-custom	SNP	*	map_l250_m2_e1	homalt	81.0638	78.8447	83.4114	87.8871	2143	575	2137	425	307	72.2353
cchapple-custom	INDEL	I6_15	*	het	98.6365	97.9268	99.3566	49.5505	9825	208	19457	126	91	72.2222
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	45.0000	69.2308	33.3333	58.4615	9	4	9	18	13	72.2222
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4403	99.1066	99.7762	43.0060	6656	60	8025	18	13	72.2222
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.2565	95.0509	97.4930	80.7300	653	34	700	18	13	72.2222
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	96.9904	94.8590	99.2198	62.4389	2288	124	2289	18	13	72.2222
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.7710	98.6981	98.8439	73.8011	1592	21	1539	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m1_e0	homalt	99.6085	99.3256	99.8929	63.9547	16791	114	16791	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m2_e0	homalt	99.6075	99.3209	99.8958	66.5083	17257	118	17257	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m2_e1	homalt	99.6110	99.3269	99.8967	66.5258	17414	118	17414	18	13	72.2222
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	83.6839	72.6708	98.6312	33.2487	1287	484	1297	18	13	72.2222
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.6451	98.4501	98.8410	73.7492	1588	25	1535	18	13	72.2222
egarrison-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5935	99.4554	99.7320	55.2895	20089	110	20097	54	39	72.2222

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