PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1751-1800 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.3077 | 92.3077 | 92.3077 | 66.6667 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 90.6574 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 91.8750 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 84.4214 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 84.9432 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 85.5405 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 93.1034 | 88.5246 | 98.1818 | 85.6397 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 85.9580 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 93.1034 | 88.5246 | 98.1818 | 85.9694 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 94.8598 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 95.1220 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.4619 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 87.2727 | 80.0000 | 96.0000 | 89.8785 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 90.7480 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 87.2727 | 80.0000 | 96.0000 | 90.9747 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.0476 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 87.2727 | 80.0000 | 96.0000 | 91.1348 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 71.4286 | 62.5000 | 83.3333 | 96.5714 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.1154 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 86.9565 | 80.0000 | 95.2381 | 93.9655 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.0594 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 86.9565 | 80.0000 | 95.2381 | 94.6835 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.6188 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 88.0000 | 81.4815 | 95.6522 | 94.4712 | 22 | 5 | 22 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.3966 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.0000 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.3051 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.5962 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.6378 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.3913 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.1631 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 97.5309 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.2603 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 83.0116 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 43.3225 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7133 | 99.4851 | 99.9425 | 62.4676 | 1739 | 9 | 1739 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9067 | 99.8757 | 99.9378 | 47.2268 | 1607 | 2 | 1607 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9407 | 99.9110 | 99.9703 | 35.3939 | 6739 | 6 | 6739 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 30.9710 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 71.1864 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m0_e0 | homalt | 99.6679 | 99.4234 | 99.9135 | 58.5496 | 11553 | 67 | 11553 | 10 | 10 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m1_e0 | hetalt | 98.7952 | 100.0000 | 97.6190 | 72.5490 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l125_m0_e0 | homalt | 99.5817 | 99.2998 | 99.8651 | 65.5375 | 6665 | 47 | 6665 | 9 | 9 | 100.0000 | |
| jli-custom | SNP | * | map_l150_m0_e0 | homalt | 99.5955 | 99.3641 | 99.8280 | 71.6988 | 4063 | 26 | 4063 | 7 | 7 | 100.0000 | |
| jli-custom | SNP | * | map_l150_m1_e0 | homalt | 99.6978 | 99.4855 | 99.9109 | 67.4251 | 11215 | 58 | 11215 | 10 | 10 | 100.0000 | |
| jli-custom | SNP | * | map_l150_m2_e0 | homalt | 99.7002 | 99.4871 | 99.9142 | 70.0015 | 11639 | 60 | 11639 | 10 | 10 | 100.0000 | |