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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 354 355 356 357 358 359 360 361 362 ... 1720 1721 » 17851-17900 / 86044 show all
qzeng-custom	INDEL	D1_5	map_l100_m2_e0	*	90.1218	83.8120	97.4590	87.8583	1605	310	1841	48	35	72.9167
gduggal-bwaplat	INDEL	D16_PLUS	*	het	80.5941	68.7559	97.3566	80.9524	2172	987	2173	59	43	72.8814
jlack-gatk	INDEL	*	HG002complexvar	*	99.2231	99.0863	99.3603	58.0205	76235	703	76113	490	357	72.8571
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	89.4545	89.1929	89.7177	61.8267	27186	3294	25967	2976	2168	72.8495
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	89.4545	89.1929	89.7177	61.8267	27186	3294	25967	2976	2168	72.8495
ciseli-custom	INDEL	*	map_l150_m2_e1	homalt	63.5484	54.2683	76.6571	91.7065	267	225	266	81	59	72.8395
anovak-vg	INDEL	D16_PLUS	HG002complexvar	homalt	75.3150	76.8166	73.8710	63.3570	222	67	229	81	59	72.8395
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	94.9721	95.9293	94.0338	60.7675	13197	560	21640	1373	1000	72.8332
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	94.9721	95.9293	94.0338	60.7675	13197	560	21640	1373	1000	72.8332
gduggal-snapfb	INDEL	*	HG002compoundhet	*	70.8383	64.3391	78.7981	55.4360	19276	10684	29725	7998	5825	72.8307
qzeng-custom	INDEL	D1_5	HG002compoundhet	het	92.9212	93.9236	91.9400	64.3165	1623	105	11042	968	705	72.8306
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	62.1592	62.6870	61.6403	53.4558	19107	11373	30086	18723	13632	72.8088
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	62.1592	62.6870	61.6403	53.4558	19107	11373	30086	18723	13632	72.8088
gduggal-snapplat	SNP	tv	HG002compoundhet	homalt	93.1015	91.1747	95.1114	51.4204	3089	299	3074	158	115	72.7848
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	81.1375	80.9173	81.3588	37.8886	3299	778	3365	771	561	72.7626
anovak-vg	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	62.4653	60.2952	64.7975	51.6129	817	538	1040	565	411	72.7434
astatham-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.4524	910	2	910	11	8	72.7273
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	95.9826	96.1806	95.7854	80.4641	277	11	250	11	8	72.7273
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1904	98.9484	99.4336	67.7810	3858	41	3862	22	16	72.7273
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	95.8013	95.8333	95.7692	80.3625	276	12	249	11	8	72.7273
gduggal-snapvard	INDEL	*	tech_badpromoters	*	57.9096	53.9474	62.5000	60.5381	41	35	55	33	24	72.7273
gduggal-snapvard	INDEL	*	tech_badpromoters	het	61.5513	69.2308	55.4054	61.8557	27	12	41	33	24	72.7273
gduggal-snapvard	INDEL	I6_15	map_l150_m0_e0	*	61.5942	62.5000	60.7143	91.7889	5	3	17	11	8	72.7273
gduggal-snapvard	INDEL	I6_15	map_l150_m0_e0	het	74.4186	100.0000	59.2593	91.4013	4	0	16	11	8	72.7273
gduggal-snapvard	SNP	tv	map_l125_m1_e0	homalt	98.0991	96.4505	99.8050	66.5043	5652	208	5629	11	8	72.7273
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	89.9123	83.3333	97.6190	70.4225	455	91	451	11	8	72.7273
ltrigg-rtg2	INDEL	D6_15	HG002compoundhet	het	97.1219	96.8458	97.3995	54.6381	829	27	824	22	16	72.7273
jpowers-varprowl	SNP	*	map_l125_m1_e0	homalt	99.1107	98.5566	99.6710	69.6349	16661	244	16661	55	40	72.7273
jpowers-varprowl	SNP	*	map_l125_m2_e0	homalt	99.1290	98.5842	99.6799	71.9156	17129	246	17129	55	40	72.7273
jpowers-varprowl	SNP	*	map_l125_m2_e1	homalt	99.1340	98.5911	99.6828	71.9295	17285	247	17285	55	40	72.7273
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6438	99.6438	99.6438	69.4439	3077	11	3077	11	8	72.7273
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	81.7466	69.7674	98.6920	34.2284	2460	1066	2490	33	24	72.7273
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	81.7466	69.7674	98.6920	34.2284	2460	1066	2490	33	24	72.7273
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.5379	95.4068	95.6693	67.9563	727	35	729	33	24	72.7273
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	70.1987	60.9195	82.8125	80.6647	53	34	53	11	8	72.7273
egarrison-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	94.2276	93.3190	95.1542	68.0956	433	31	432	22	16	72.7273
eyeh-varpipe	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	0.0000	0.0000	71.4286	95.0323	0	0	55	22	16	72.7273
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	95.9826	96.1806	95.7854	80.6810	277	11	250	11	8	72.7273
ckim-isaac	SNP	ti	*	homalt	98.4855	97.0214	99.9944	13.4256	779120	23919	779153	44	32	72.7273
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.5939	910	2	910	11	8	72.7273
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	97.7225	97.5369	97.9087	80.2849	594	15	515	11	8	72.7273
jlack-gatk	SNP	*	map_l125_m1_e0	homalt	99.2141	98.5685	99.8681	64.3628	16663	242	16663	22	16	72.7273
jlack-gatk	SNP	*	map_l125_m2_e0	homalt	99.2238	98.5842	99.8717	66.9110	17129	246	17129	22	16	72.7273
jlack-gatk	SNP	*	map_l125_m2_e1	homalt	99.2279	98.5911	99.8729	66.9215	17285	247	17285	22	16	72.7273
jlack-gatk	SNP	*	map_l250_m1_e0	homalt	98.5442	97.5639	99.5443	85.9993	2403	60	2403	11	8	72.7273
jlack-gatk	SNP	*	map_l250_m2_e0	homalt	98.6471	97.7290	99.5827	86.9731	2625	61	2625	11	8	72.7273
jlack-gatk	SNP	*	map_l250_m2_e1	homalt	98.6256	97.6821	99.5874	87.0236	2655	63	2655	11	8	72.7273
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.6507	98.5366	94.8357	90.7270	202	3	202	11	8	72.7273
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.6507	98.5366	94.8357	90.7270	202	3	202	11	8	72.7273
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	77.7778	95.4545	65.6250	81.0651	21	1	21	11	8	72.7273

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