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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
17551-17600 / 86044 show all
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.4699
97.9603
96.9843
55.7493
1978741220132626469
74.9201
bgallagher-sentieonINDELD1_5**
99.5437
99.4494
99.6383
60.2111
145937808145993530397
74.9057
egarrison-hhgaINDELI1_5*homalt
99.4873
99.3910
99.5837
52.1988
6006036860044251188
74.9004
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.8292
99.0334
94.7210
60.8998
1137311111986668500
74.8503
gduggal-snapvardINDEL**het
84.4835
93.2561
77.2195
60.6809
181038130922281316730150370
74.8429
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
32.6056
25.2495
46.0100
54.7659
253749369433324
74.8268
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5319
99.4945
99.5693
75.4597
3306816833062143107
74.8252
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
73.1437
60.1120
93.3897
54.7163
365024223645258193
74.8062
gduggal-snapvardINDELI6_15map_siren*
59.5493
55.7377
63.9205
78.6148
17013522512795
74.8031
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
31.5326
23.3410
48.5830
48.6486
10233512012795
74.8031
hfeng-pmm3INDELI1_5**
99.5494
99.2672
99.8332
56.8186
1495601104149606250187
74.8000
cchapple-customSNP*HG002compoundhethet
98.9809
98.7163
99.2469
44.7646
139961821620912392
74.7967
asubramanian-gatkINDELI1_5**
99.0996
98.6108
99.5933
59.2515
1485712093148648607454
74.7941
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
87.2924
84.6591
90.0947
59.0476
1043189104611586
74.7826
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.6456
96.4829
98.8367
71.2472
29408107228971341255
74.7801
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.6456
96.4829
98.8367
71.2472
29408107228971341255
74.7801
ndellapenna-hhgaINDELD1_5HG002complexvarhomalt
98.4078
98.9338
97.8875
56.5863
1048511310472226169
74.7788
gduggal-bwafbINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.8607
93.0351
96.7593
72.4507
56774256509218163
74.7706
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
59.4331
51.2295
70.7650
59.7360
25023825910780
74.7664
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.9297
97.2667
96.5950
72.0063
291882292210377
74.7573
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
97.8939
99.4854
96.3524
57.0732
146947615268578432
74.7405
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.4966
99.3171
99.6769
61.8156
28067193280709168
74.7253
ndellapenna-hhgaINDELI16_PLUSHG002compoundhet*
86.2940
82.1745
90.8483
50.5089
17613821767178133
74.7191
anovak-vgSNPtvHG002compoundhethet
77.7767
79.7346
75.9127
53.8008
3726947434613791030
74.6918
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_11to50het
75.1577
77.7747
72.7110
36.3946
2845813407415291142
74.6893
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.4581
91.0630
95.9827
61.5473
57575655758241180
74.6888
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.4581
91.0630
95.9827
61.5473
57575655758241180
74.6888
ndellapenna-hhgaINDELD6_15HG002complexvar*
88.9462
85.9864
92.1169
57.7872
45597434569391292
74.6803
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
79.6846
71.7362
89.6138
68.4553
269810632692312233
74.6795
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
79.6846
71.7362
89.6138
68.4553
269810632692312233
74.6795
anovak-vgINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
55.0866
65.0355
47.7778
51.5804
917493137615041123
74.6676
jli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6490
99.5246
99.7737
73.4430
33078158330717556
74.6667
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.7691
94.9258
98.6854
40.6471
563130156307556
74.6667
gduggal-bwavardINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
62.0275
82.7982
49.5879
79.0744
36175361367274
74.6594
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
68.7702
67.0305
70.6027
63.8943
38081873547122781700
74.6269
ltrigg-rtg2INDELD6_15HG002complexvar*
97.7900
96.9257
98.6698
51.5393
513916349706750
74.6269
ckim-isaacINDELI1_5*het
97.5134
97.3900
97.6371
50.7018
7697820637702118641391
74.6245
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
49.2492
43.6456
56.5037
39.7780
41285330423132572430
74.6085
jli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.4747
97.3872
99.5868
71.5695
15170407151846347
74.6032
qzeng-customINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
77.6395
70.9330
85.7466
65.4687
59324375812694
74.6032
hfeng-pmm1INDEL***
99.3397
99.0289
99.6526
57.3618
34119633463410571189887
74.6005
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
91.7145
87.1038
96.8405
38.5031
51677655180169126
74.5562
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
81.2885
83.6842
79.0262
67.0065
1113217844224167
74.5536
qzeng-customSNPtiHG002compoundhethomalt
98.8966
98.7963
98.9971
38.0829
73058954295541
74.5455
raldana-dualsentieonINDELD1_5HG002complexvar*
99.1616
98.5022
99.8299
57.5831
32225490322765541
74.5455
ckim-gatkINDELI1_5HG002complexvar*
99.4404
99.0498
99.8341
56.8511
33046317330925541
74.5455
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
43.2688
35.3933
55.6522
57.2491
63115645138
74.5098
mlin-fermikitSNP*lowcmp_SimpleRepeat_triTR_11to50*
98.1429
97.6886
98.6014
32.5284
7185170719110276
74.5098
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
85.7237
78.9364
93.7881
67.9922
7572027705138
74.5098
hfeng-pmm2INDELI1_5HG002complexvar*
99.5522
99.2597
99.8464
56.6743
33116247331595138
74.5098