PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17401-17450 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5383 | 99.8148 | 99.2634 | 82.5064 | 539 | 1 | 539 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.5108 | 94.0299 | 99.1263 | 61.5359 | 2268 | 144 | 2269 | 20 | 15 | 75.0000 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2446 | 91.6084 | 97.0370 | 92.7807 | 131 | 12 | 131 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5274 | 93.1373 | 95.9596 | 92.6230 | 95 | 7 | 95 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | * | map_l100_m1_e0 | homalt | 59.0007 | 41.8509 | 99.9646 | 77.1745 | 11301 | 15702 | 11301 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | * | map_l100_m2_e0 | homalt | 59.7529 | 42.6116 | 99.9659 | 78.6625 | 11728 | 15795 | 11728 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | * | map_l100_m2_e1 | homalt | 59.9673 | 42.8299 | 99.9664 | 78.5551 | 11905 | 15891 | 11905 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | tv | HG002complexvar | homalt | 98.0771 | 96.2349 | 99.9913 | 23.4384 | 91530 | 3581 | 91516 | 8 | 6 | 75.0000 | |
| ckim-vqsr | SNP | tv | HG002compoundhet | homalt | 98.7009 | 97.5502 | 99.8791 | 43.2979 | 3305 | 83 | 3304 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8183 | 99.8183 | 99.8183 | 42.3560 | 2197 | 4 | 2198 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6106 | 99.4231 | 99.7987 | 35.5602 | 3964 | 23 | 3966 | 8 | 6 | 75.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.3034 | 71.2871 | 94.5946 | 91.5813 | 72 | 29 | 70 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.1345 | 68.1818 | 91.4894 | 92.2056 | 45 | 21 | 43 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | homalt | 99.7265 | 99.5580 | 99.8956 | 63.0055 | 3829 | 17 | 3829 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | * | decoy | * | 64.0777 | 50.0000 | 89.1892 | 99.8767 | 5 | 5 | 33 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 76.1194 | 94.5395 | 0 | 0 | 51 | 16 | 12 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 38.4615 | 92.2156 | 0 | 0 | 5 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 69.2308 | 95.7377 | 0 | 0 | 9 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 60.9756 | 95.2326 | 0 | 0 | 25 | 16 | 12 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 55.5556 | 95.4003 | 0 | 0 | 15 | 12 | 9 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 60.9756 | 95.2326 | 0 | 0 | 25 | 16 | 12 | 75.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 76.0643 | 66.6667 | 88.5463 | 95.7295 | 2 | 1 | 804 | 104 | 78 | 75.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 80.9524 | 99.7647 | 0 | 0 | 17 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 71.4286 | 94.2149 | 0 | 0 | 10 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 82.6087 | 96.5465 | 0 | 0 | 19 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 73.3333 | 92.1466 | 0 | 0 | 11 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 84.0000 | 89.1775 | 0 | 0 | 21 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6608 | 99.4733 | 99.8491 | 69.8452 | 2644 | 14 | 2646 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 81.0762 | 207 | 1 | 207 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.6703 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7832 | 99.7317 | 99.8347 | 68.1691 | 9666 | 26 | 9666 | 16 | 12 | 75.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7595 | 99.7755 | 99.7435 | 70.4864 | 6222 | 14 | 6222 | 16 | 12 | 75.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.7552 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5665 | 95.0980 | 96.0396 | 92.6652 | 97 | 5 | 97 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | * | map_l150_m0_e0 | homalt | 99.3242 | 98.8506 | 99.8025 | 74.1808 | 4042 | 47 | 4042 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7788 | 99.5931 | 99.9652 | 63.6860 | 11505 | 47 | 11505 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7788 | 99.5931 | 99.9652 | 63.6860 | 11505 | 47 | 11505 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8552 | 99.7933 | 99.9172 | 69.3872 | 4827 | 10 | 4827 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8411 | 99.8094 | 99.8729 | 71.5397 | 3142 | 6 | 3142 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9282 | 99.9202 | 99.9362 | 44.6182 | 6263 | 5 | 6263 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | map_l100_m0_e0 | homalt | 99.5677 | 99.2411 | 99.8964 | 59.9180 | 7715 | 59 | 7715 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.5618 | 99.2357 | 99.8901 | 68.6615 | 7271 | 56 | 7271 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.5587 | 99.2253 | 99.8942 | 70.9853 | 7557 | 59 | 7557 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.5631 | 99.2331 | 99.8953 | 71.0135 | 7634 | 59 | 7634 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7116 | 99.6705 | 99.7527 | 66.8941 | 4840 | 16 | 4840 | 12 | 9 | 75.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6764 | 99.7409 | 99.6119 | 69.3315 | 3080 | 8 | 3080 | 12 | 9 | 75.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9073 | 99.8718 | 99.9429 | 60.7832 | 7010 | 9 | 7006 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | homalt | 98.8830 | 98.2477 | 99.5266 | 85.6901 | 841 | 15 | 841 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | homalt | 98.9259 | 98.2924 | 99.5676 | 86.6638 | 921 | 16 | 921 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | homalt | 98.9362 | 98.3087 | 99.5717 | 86.7386 | 930 | 16 | 930 | 4 | 3 | 75.0000 | |