PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17001-17050 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7749 | 98.7768 | 98.7730 | 82.1174 | 323 | 4 | 322 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.8253 | 98.8270 | 98.8235 | 83.5590 | 337 | 4 | 336 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.8321 | 98.8338 | 98.8304 | 83.8298 | 339 | 4 | 338 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.2317 | 98.4848 | 97.9798 | 85.9375 | 195 | 3 | 194 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.2581 | 98.5075 | 98.0100 | 87.6079 | 198 | 3 | 197 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.2837 | 98.5294 | 98.0392 | 87.7182 | 201 | 3 | 200 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.6521 | 97.7707 | 99.5495 | 74.2085 | 921 | 21 | 884 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I6_15 | map_siren | homalt | 97.8261 | 100.0000 | 95.7447 | 85.1501 | 90 | 0 | 90 | 4 | 3 | 75.0000 | |
| ckim-dragen | SNP | ti | map_l250_m0_e0 | homalt | 99.3135 | 99.5413 | 99.0868 | 87.9769 | 434 | 2 | 434 | 4 | 3 | 75.0000 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | homalt | 99.2838 | 99.1717 | 99.3962 | 72.8817 | 1317 | 11 | 1317 | 8 | 6 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 75.5319 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.7270 | 98.3908 | 99.0654 | 70.1742 | 428 | 7 | 424 | 4 | 3 | 75.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0078 | 98.8530 | 99.1632 | 72.8794 | 948 | 11 | 948 | 8 | 6 | 75.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3494 | 96.6507 | 98.0583 | 77.4370 | 202 | 7 | 202 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 60.0000 | 98.0620 | 0 | 0 | 6 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 42.8571 | 98.1432 | 0 | 0 | 3 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4702 | 93.2292 | 95.7447 | 81.9664 | 358 | 26 | 360 | 16 | 12 | 75.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.3139 | 89.5894 | 97.3615 | 44.5095 | 2160 | 251 | 2214 | 60 | 45 | 75.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.1942 | 99.4652 | 98.9247 | 51.8135 | 372 | 2 | 368 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5931 | 99.6524 | 99.5338 | 59.0453 | 860 | 3 | 854 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4269 | 99.0751 | 99.7811 | 30.6904 | 1714 | 16 | 1823 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.5926 | 100.0000 | 86.2069 | 89.1386 | 25 | 0 | 25 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5410 | 96.4067 | 98.7024 | 79.1406 | 1100 | 41 | 1217 | 16 | 12 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.3333 | 100.0000 | 20.0000 | 89.3617 | 1 | 0 | 1 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1748 | 98.8355 | 99.5163 | 68.9098 | 1358 | 16 | 1646 | 8 | 6 | 75.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.7937 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3367 | 78.3784 | 93.6508 | 78.1250 | 58 | 16 | 59 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2020 | 91.9487 | 96.5686 | 87.1557 | 788 | 69 | 788 | 28 | 21 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | het | 94.7368 | 93.3962 | 96.1165 | 94.1344 | 99 | 7 | 99 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_siren | homalt | 96.6009 | 94.9670 | 98.2921 | 70.2641 | 1151 | 61 | 1151 | 20 | 15 | 75.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | homalt | 81.7610 | 72.2222 | 94.2029 | 75.1799 | 65 | 25 | 65 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 94.2029 | 89.5928 | 0 | 0 | 65 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 89.4737 | 96.2891 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 89.4737 | 96.2891 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9984 | 94.8103 | 99.2899 | 54.8611 | 1699 | 93 | 1678 | 12 | 9 | 75.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5396 | 92.6910 | 98.5689 | 43.9880 | 558 | 44 | 551 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.5382 | 68.9655 | 93.9394 | 75.0943 | 60 | 27 | 62 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7080 | 99.4792 | 97.9487 | 44.6023 | 191 | 1 | 191 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2478 | 94.4444 | 94.0520 | 77.1259 | 272 | 16 | 253 | 16 | 12 | 75.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8983 | 96.2840 | 99.5676 | 55.8569 | 5519 | 213 | 5527 | 24 | 18 | 75.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.0000 | 100.0000 | 33.3333 | 94.8718 | 1 | 0 | 2 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 79.0514 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.6154 | 100.0000 | 99.2337 | 79.2939 | 518 | 0 | 518 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.6248 | 100.0000 | 99.2523 | 80.8106 | 531 | 0 | 531 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.6310 | 100.0000 | 99.2647 | 80.8922 | 540 | 0 | 540 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1944 | 96.7449 | 99.6880 | 59.3016 | 1278 | 43 | 1278 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I6_15 | map_siren | homalt | 96.7033 | 97.7778 | 95.6522 | 81.6367 | 88 | 2 | 88 | 4 | 3 | 75.0000 | |