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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16701-16750 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 13.3333 | 100.0000 | 7.1429 | 89.5522 | 1 | 0 | 1 | 13 | 10 | 76.9231 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.0341 | 98.8095 | 99.2597 | 89.1343 | 1743 | 21 | 1743 | 13 | 10 | 76.9231 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 60.6061 | 95.0000 | 0 | 0 | 20 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.0407 | 91.6667 | 77.5862 | 88.2114 | 44 | 4 | 45 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.8918 | 92.1569 | 78.6885 | 88.0626 | 47 | 4 | 48 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2552 | 98.0301 | 98.4813 | 60.8417 | 846 | 17 | 843 | 13 | 10 | 76.9231 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.4823 | 96.9868 | 97.9829 | 69.3497 | 2575 | 80 | 2526 | 52 | 40 | 76.9231 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.1537 | 99.4096 | 96.9291 | 83.2983 | 1347 | 8 | 1231 | 39 | 30 | 76.9231 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.6126 | 67.6959 | 69.5544 | 59.1226 | 3464 | 1653 | 5010 | 2193 | 1686 | 76.8810 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 91.9145 | 93.3439 | 90.5282 | 50.5104 | 14711 | 1049 | 14002 | 1465 | 1126 | 76.8601 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | * | 21.4346 | 13.1398 | 58.1315 | 77.3688 | 172 | 1137 | 168 | 121 | 93 | 76.8595 | |
| ndellapenna-hhga | INDEL | I1_5 | * | homalt | 99.4589 | 99.3199 | 99.5983 | 51.5644 | 60017 | 411 | 60008 | 242 | 186 | 76.8595 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 66.4593 | 77.1439 | 58.3743 | 42.1879 | 6477 | 1919 | 9372 | 6683 | 5135 | 76.8367 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 46.7905 | 46.8317 | 46.7493 | 53.6445 | 1892 | 2148 | 3092 | 3522 | 2706 | 76.8313 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5168 | 96.7193 | 98.3276 | 70.0415 | 4835 | 164 | 4821 | 82 | 63 | 76.8293 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5168 | 96.7193 | 98.3276 | 70.0415 | 4835 | 164 | 4821 | 82 | 63 | 76.8293 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.5983 | 99.6119 | 99.5848 | 74.9525 | 33107 | 129 | 33101 | 138 | 106 | 76.8116 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 86.9581 | 84.9537 | 89.0595 | 73.1224 | 18604 | 3295 | 18674 | 2294 | 1762 | 76.8091 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | hetalt | 48.8074 | 34.6851 | 82.3281 | 84.4012 | 1283 | 2416 | 1365 | 293 | 225 | 76.7918 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 47.4332 | 31.5939 | 95.1220 | 44.9136 | 1114 | 2412 | 1092 | 56 | 43 | 76.7857 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 47.4332 | 31.5939 | 95.1220 | 44.9136 | 1114 | 2412 | 1092 | 56 | 43 | 76.7857 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e0 | homalt | 98.0484 | 96.3703 | 99.7860 | 62.8472 | 26524 | 999 | 26107 | 56 | 43 | 76.7857 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | homalt | 98.0418 | 96.3556 | 99.7880 | 62.8493 | 26783 | 1013 | 26357 | 56 | 43 | 76.7857 | |
| ghariani-varprowl | INDEL | I1_5 | HG002complexvar | * | 92.9673 | 92.2577 | 93.6879 | 54.6199 | 30779 | 2583 | 30650 | 2065 | 1585 | 76.7554 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 25.0124 | 14.6182 | 86.5625 | 67.4300 | 559 | 3265 | 554 | 86 | 66 | 76.7442 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 51.6425 | 35.4076 | 95.3714 | 40.1032 | 899 | 1640 | 886 | 43 | 33 | 76.7442 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.7461 | 88.4908 | 97.4313 | 66.6799 | 1630 | 212 | 1631 | 43 | 33 | 76.7442 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | * | 74.6205 | 69.3798 | 80.7175 | 81.6461 | 179 | 79 | 180 | 43 | 33 | 76.7442 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | * | 75.2386 | 70.0758 | 81.2227 | 82.7430 | 185 | 79 | 186 | 43 | 33 | 76.7442 | |
| mlin-fermikit | INDEL | D6_15 | map_siren | het | 83.2384 | 82.1429 | 84.3636 | 79.3233 | 230 | 50 | 232 | 43 | 33 | 76.7442 | |
| gduggal-bwafb | INDEL | D6_15 | * | het | 96.0906 | 93.5300 | 98.7954 | 45.4106 | 10842 | 750 | 17633 | 215 | 165 | 76.7442 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.2645 | 99.7630 | 89.3404 | 69.5631 | 1684 | 4 | 1693 | 202 | 155 | 76.7327 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1973 | 98.5845 | 99.8177 | 71.4580 | 63519 | 912 | 63531 | 116 | 89 | 76.7241 | |
| anovak-vg | SNP | * | HG002compoundhet | het | 78.0560 | 77.3875 | 78.7362 | 46.6128 | 10972 | 3206 | 12323 | 3328 | 2553 | 76.7127 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.1119 | 93.7088 | 90.5685 | 58.7145 | 1847 | 124 | 5608 | 584 | 448 | 76.7123 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.1119 | 93.7088 | 90.5685 | 58.7145 | 1847 | 124 | 5608 | 584 | 448 | 76.7123 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 56.6887 | 53.0607 | 60.8492 | 45.3700 | 11806 | 10444 | 12611 | 8114 | 6224 | 76.7069 | |
| anovak-vg | INDEL | D6_15 | * | * | 67.2100 | 61.4480 | 74.1646 | 48.0426 | 16033 | 10059 | 16202 | 5644 | 4329 | 76.7009 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.4069 | 93.3537 | 95.4842 | 40.6110 | 22909 | 1631 | 24020 | 1136 | 871 | 76.6725 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 86.8238 | 79.0267 | 96.3280 | 91.0593 | 682 | 181 | 787 | 30 | 23 | 76.6667 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | * | 69.4080 | 58.1573 | 86.0558 | 82.7274 | 1294 | 931 | 1296 | 210 | 161 | 76.6667 | |
| mlin-fermikit | INDEL | * | segdup | het | 95.7622 | 95.6344 | 95.8904 | 92.0914 | 1402 | 64 | 1400 | 60 | 46 | 76.6667 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5545 | 99.7340 | 97.4026 | 53.7630 | 1125 | 3 | 1125 | 30 | 23 | 76.6667 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 31.0023 | 26.7606 | 36.8421 | 38.3117 | 19 | 52 | 35 | 60 | 46 | 76.6667 | |
| anovak-vg | SNP | tv | map_l150_m2_e0 | homalt | 87.3307 | 78.0798 | 99.0683 | 73.9018 | 3188 | 895 | 3190 | 30 | 23 | 76.6667 | |
| anovak-vg | SNP | tv | map_l150_m2_e1 | homalt | 87.3530 | 78.1084 | 99.0798 | 73.8866 | 3229 | 905 | 3230 | 30 | 23 | 76.6667 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1961 | 99.9228 | 98.4799 | 61.8721 | 3884 | 3 | 3887 | 60 | 46 | 76.6667 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8850 | 98.5441 | 99.2284 | 79.4839 | 3858 | 57 | 3858 | 30 | 23 | 76.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.1550 | 91.2173 | 95.1768 | 58.7259 | 592 | 57 | 592 | 30 | 23 | 76.6667 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2695 | 99.3226 | 99.2164 | 76.1399 | 47944 | 327 | 47736 | 377 | 289 | 76.6578 | |