PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16451-16500 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.2904 | 94.1423 | 98.5390 | 34.0824 | 1125 | 70 | 1214 | 18 | 14 | 77.7778 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 60.8696 | 77.7778 | 50.0000 | 52.2124 | 28 | 8 | 27 | 27 | 21 | 77.7778 | |
| anovak-vg | SNP | tv | map_l150_m0_e0 | homalt | 82.5658 | 70.7831 | 99.0546 | 79.9368 | 940 | 388 | 943 | 9 | 7 | 77.7778 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.1659 | 95.8604 | 98.5075 | 61.5311 | 1181 | 51 | 1188 | 18 | 14 | 77.7778 | |
| asubramanian-gatk | INDEL | I6_15 | HG002complexvar | hetalt | 96.0912 | 93.1316 | 99.2450 | 56.3849 | 1139 | 84 | 1183 | 9 | 7 | 77.7778 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4449 | 99.3179 | 97.5871 | 73.2136 | 728 | 5 | 728 | 18 | 14 | 77.7778 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5702 | 98.7805 | 92.5620 | 88.0435 | 162 | 2 | 112 | 9 | 7 | 77.7778 | |
| bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | het | 98.9817 | 98.8462 | 99.1176 | 59.3518 | 3084 | 36 | 3033 | 27 | 21 | 77.7778 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2974 | 99.0450 | 97.5610 | 73.6240 | 726 | 7 | 720 | 18 | 14 | 77.7778 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.6696 | 96.0426 | 99.3526 | 60.4030 | 1893 | 78 | 5525 | 36 | 28 | 77.7778 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6696 | 96.0426 | 99.3526 | 60.4030 | 1893 | 78 | 5525 | 36 | 28 | 77.7778 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3173 | 99.3243 | 99.3103 | 72.7614 | 1323 | 9 | 1296 | 9 | 7 | 77.7778 | |
| ckim-gatk | SNP | ti | map_l100_m2_e0 | homalt | 84.7018 | 73.4994 | 99.9332 | 67.2925 | 13457 | 4852 | 13457 | 9 | 7 | 77.7778 | |
| ckim-gatk | SNP | ti | map_l100_m2_e1 | homalt | 84.8134 | 73.6671 | 99.9340 | 67.2110 | 13624 | 4870 | 13624 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4606 | 99.4792 | 95.5224 | 40.8824 | 191 | 1 | 192 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7108 | 93.6893 | 95.7547 | 87.1903 | 193 | 13 | 203 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4019 | 90.2778 | 98.9209 | 55.1854 | 260 | 28 | 825 | 9 | 7 | 77.7778 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 85.7143 | 0 | 0 | 0 | 9 | 7 | 77.7778 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5894 | 97.8804 | 99.3088 | 61.8852 | 1293 | 28 | 1293 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7361 | 99.7595 | 99.7127 | 70.2512 | 6221 | 15 | 6248 | 18 | 14 | 77.7778 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | homalt | 99.4590 | 99.3246 | 99.5937 | 66.7118 | 2206 | 15 | 2206 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | homalt | 99.1254 | 99.2991 | 98.9523 | 83.2944 | 850 | 6 | 850 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | tv | map_l250_m2_e0 | homalt | 99.1471 | 99.2529 | 99.0415 | 84.5432 | 930 | 7 | 930 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | tv | map_l250_m2_e1 | homalt | 99.1552 | 99.2600 | 99.0506 | 84.6353 | 939 | 7 | 939 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 73.5160 | 59.0220 | 97.4456 | 46.9644 | 2257 | 1567 | 2060 | 54 | 42 | 77.7778 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 77.5510 | 90.4762 | 67.8571 | 99.9391 | 19 | 2 | 19 | 9 | 7 | 77.7778 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 86.5537 | 78.7879 | 96.0177 | 92.5772 | 572 | 154 | 651 | 27 | 21 | 77.7778 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 86.7233 | 78.9267 | 96.2291 | 92.7251 | 603 | 161 | 689 | 27 | 21 | 77.7778 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 86.8330 | 79.0909 | 96.2552 | 92.7907 | 609 | 161 | 694 | 27 | 21 | 77.7778 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3458 | 99.4510 | 99.2408 | 86.4188 | 2355 | 13 | 2353 | 18 | 14 | 77.7778 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6348 | 93.9058 | 97.4286 | 67.0123 | 339 | 22 | 341 | 9 | 7 | 77.7778 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1773 | 99.3135 | 93.2331 | 71.4592 | 1736 | 12 | 1736 | 126 | 98 | 77.7778 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | * | 90.7237 | 86.9110 | 94.8864 | 93.3635 | 166 | 25 | 167 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.5480 | 98.7793 | 98.3178 | 63.7657 | 1052 | 13 | 1052 | 18 | 14 | 77.7778 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.9895 | 96.1722 | 97.8208 | 47.4555 | 402 | 16 | 404 | 9 | 7 | 77.7778 | |
| raldana-dualsentieon | INDEL | I6_15 | * | het | 98.4817 | 97.7076 | 99.2683 | 55.4872 | 9803 | 230 | 9768 | 72 | 56 | 77.7778 | |
| raldana-dualsentieon | SNP | tv | * | homalt | 99.9865 | 99.9801 | 99.9928 | 19.7814 | 377048 | 75 | 377042 | 27 | 21 | 77.7778 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.3947 | 91.7722 | 99.3151 | 87.7368 | 1305 | 117 | 1305 | 9 | 7 | 77.7778 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.0412 | 96.4378 | 99.6987 | 66.1107 | 2978 | 110 | 2978 | 9 | 7 | 77.7778 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | homalt | 99.4879 | 99.7432 | 99.2340 | 80.1520 | 1165 | 3 | 1166 | 9 | 7 | 77.7778 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8153 | 96.5079 | 97.1246 | 67.5311 | 608 | 22 | 608 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9427 | 98.5704 | 99.3179 | 69.3175 | 2620 | 38 | 2621 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0002 | 95.9052 | 96.0954 | 70.9880 | 445 | 19 | 443 | 18 | 14 | 77.7778 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 81.8581 | 70.0143 | 98.5246 | 47.8186 | 488 | 209 | 601 | 9 | 7 | 77.7778 | |
| ckim-isaac | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5412 | 91.9336 | 99.4434 | 50.8361 | 1607 | 141 | 1608 | 9 | 7 | 77.7778 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.7251 | 83.8065 | 98.8889 | 77.1767 | 797 | 154 | 801 | 9 | 7 | 77.7778 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 79.6992 | 74.6479 | 85.4839 | 48.7603 | 53 | 18 | 53 | 9 | 7 | 77.7778 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5702 | 98.7805 | 92.5620 | 88.2296 | 162 | 2 | 112 | 9 | 7 | 77.7778 | |
| ckim-isaac | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.6931 | 93.6813 | 99.9050 | 54.1997 | 9459 | 638 | 9468 | 9 | 7 | 77.7778 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | * | 97.6423 | 97.5046 | 97.7805 | 66.9855 | 1602 | 41 | 1586 | 36 | 28 | 77.7778 | |