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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 323 324 325 326 327 328 329 330 331 ... 1720 1721 » 16301-16350 / 86044 show all
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6910	99.5997	97.7987	75.1563	1244	5	1244	28	22	78.5714
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6910	99.5997	97.7987	75.1563	1244	5	1244	28	22	78.5714
ckim-vqsr	INDEL	D6_15	HG002complexvar	het	98.8682	98.6538	99.0835	59.5418	3078	42	3027	28	22	78.5714
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.4993	99.5404	97.4797	67.4289	1083	5	1083	28	22	78.5714
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.0727	94.3231	97.8884	82.5020	648	39	649	14	11	78.5714
eyeh-varpipe	INDEL	*	map_l100_m1_e0	*	94.5716	93.6419	95.5200	92.2711	3358	228	4776	224	176	78.5714
gduggal-bwavard	SNP	ti	map_l100_m0_e0	homalt	98.3810	96.9900	99.8126	63.0879	7540	234	7457	14	11	78.5714
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	97.5084	97.1778	97.8412	76.7438	1033	30	1269	28	22	78.5714
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5772	99.8940	99.2624	72.0923	1884	2	1884	14	11	78.5714
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.2888	95.8808	98.7387	78.3161	1094	47	1096	14	11	78.5714
jlack-gatk	SNP	*	map_l100_m1_e0	homalt	99.3858	98.8816	99.8952	58.5121	26701	302	26701	28	22	78.5714
jlack-gatk	SNP	*	map_l100_m2_e0	homalt	99.3957	98.8991	99.8972	61.0320	27220	303	27220	28	22	78.5714
jlack-gatk	SNP	*	map_l100_m2_e1	homalt	99.3962	98.8991	99.8982	60.9989	27490	306	27490	28	22	78.5714
qzeng-custom	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	91.5170	91.6918	91.3428	68.3622	607	55	1034	98	77	78.5714
mlin-fermikit	INDEL	*	map_l100_m1_e0	*	74.7799	65.3095	87.4627	78.8610	2342	1244	2344	336	264	78.5714
rpoplin-dv42	SNP	ti	HG002compoundhet	het	99.5469	99.3898	99.7044	38.8720	9447	58	9445	28	22	78.5714
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7238	99.6461	99.8015	61.5050	28160	100	28162	56	44	78.5714
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	92.9356	91.3534	94.5736	81.3987	243	23	244	14	11	78.5714
ndellapenna-hhga	INDEL	I16_PLUS	HG002compoundhet	het	51.2283	72.3404	39.6552	84.3243	34	13	46	70	55	78.5714
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	85.3128	76.1578	96.9697	63.3042	444	139	448	14	11	78.5714
ciseli-custom	SNP	tv	map_l100_m0_e0	homalt	86.8291	85.5694	88.1265	64.0732	3291	555	3288	443	348	78.5553
gduggal-snapvard	INDEL	I6_15	HG002complexvar	*	55.8350	49.5825	63.8921	47.3893	2375	2415	2794	1579	1240	78.5307
gduggal-snapvard	INDEL	D1_5	*	het	88.4948	98.0268	80.6523	58.4318	85844	1728	115949	27815	21843	78.5296
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	69.4565	77.0732	63.2099	78.1317	158	47	256	149	117	78.5235
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	69.4565	77.0732	63.2099	78.1317	158	47	256	149	117	78.5235
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	35.8000	22.6696	85.0767	69.9119	608	2074	610	107	84	78.5047
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	72.6300	71.4689	73.8294	38.5577	4812	1921	5913	2096	1645	78.4828
ghariani-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	65.1163	73.2026	58.6387	74.4652	112	41	112	79	62	78.4810
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	95.5611	96.0968	95.0314	82.9837	1748	71	1511	79	62	78.4810
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	95.5611	96.0968	95.0314	82.9837	1748	71	1511	79	62	78.4810
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.7466	91.9826	97.6819	48.8321	2742	239	2739	65	51	78.4615
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	94.6758	93.5408	95.8387	47.4428	1593	110	5988	260	204	78.4615
qzeng-custom	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	84.1984	77.2530	92.5161	66.6953	1423	419	1434	116	91	78.4483
eyeh-varpipe	INDEL	*	map_l100_m2_e0	*	94.5816	93.6637	95.5178	92.5332	3459	234	4944	232	182	78.4483
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	79.5452	72.3383	88.3470	65.9371	2942	1125	3025	399	313	78.4461
ciseli-custom	SNP	*	map_l100_m2_e1	homalt	90.5022	89.8151	91.2000	62.7951	24965	2831	24852	2398	1881	78.4404
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	41.5658	38.7187	44.8649	39.9351	139	220	166	204	160	78.4314
dgrover-gatk	INDEL	I16_PLUS	*	*	97.6461	96.9265	98.3766	71.1206	6181	196	6181	102	80	78.4314
ciseli-custom	SNP	*	map_l100_m2_e0	homalt	90.4763	89.7867	91.1766	62.8157	24712	2811	24604	2381	1867	78.4124
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	51.7221	46.8234	57.7656	39.6200	17747	20155	24726	18078	14175	78.4102
gduggal-snapplat	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	40.4600	27.3210	77.9449	70.7692	309	822	311	88	69	78.4091
hfeng-pmm1	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9724	98.3166	99.6370	70.9510	92859	1590	92766	338	265	78.4024
egarrison-hhga	INDEL	I6_15	*	*	96.6680	95.4155	97.9538	47.3697	23685	1138	23696	495	388	78.3838
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e0	*	61.1650	72.0000	53.1646	88.2789	18	7	42	37	29	78.3784
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e0	het	64.5327	93.3333	49.3151	88.3013	14	1	36	37	29	78.3784
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e1	*	62.2963	74.0741	53.7500	88.5057	20	7	43	37	29	78.3784
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e1	het	65.2174	93.7500	50.0000	88.5093	15	1	37	37	29	78.3784
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8269	98.7352	98.9188	69.0820	13583	174	13540	148	116	78.3784
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8269	98.7352	98.9188	69.0820	13583	174	13540	148	116	78.3784
qzeng-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.6451	97.4107	97.8807	69.5745	5944	158	34593	749	587	78.3712

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