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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 322 323 324 325 326 327 328 329 330 ... 1720 1721 » 16251-16300 / 86044 show all
ciseli-custom	INDEL	I1_5	map_l250_m2_e1	het	54.4118	56.0606	52.8571	97.3987	37	29	37	33	26	78.7879
ciseli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	49.1803	50.8475	47.6190	48.7805	30	29	30	33	26	78.7879
mlin-fermikit	INDEL	*	map_l150_m2_e0	*	64.8581	52.4858	84.8624	85.1067	739	669	740	132	104	78.7879
ckim-isaac	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	96.8145	96.7836	96.8455	61.4159	32167	1069	31775	1035	815	78.7440
bgallagher-sentieon	INDEL	I16_PLUS	*	*	97.0316	96.1110	97.9699	70.7650	6129	248	6129	127	100	78.7402
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	30.5882	23.0769	45.3488	45.7413	39	130	78	94	74	78.7234
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	95.7165	94.9376	96.5082	74.6707	1294	69	1299	47	37	78.7234
jpowers-varprowl	SNP	*	HG002compoundhet	homalt	89.3414	99.8238	80.8512	43.1364	10763	19	10771	2551	2008	78.7142
cchapple-custom	INDEL	I1_5	*	*	99.2924	98.8889	99.6992	56.2734	148990	1674	149480	451	355	78.7140
qzeng-custom	SNP	ti	map_l250_m0_e0	het	67.5985	56.9593	83.1250	98.4261	532	402	532	108	85	78.7037
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	91.7223	87.9766	95.8011	68.6010	14144	1933	12617	553	435	78.6618
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	91.7223	87.9766	95.8011	68.6010	14144	1933	12617	553	435	78.6618
anovak-vg	INDEL	D1_5	*	homalt	93.1579	92.5438	93.7802	58.8390	45278	3648	45761	3035	2387	78.6491
gduggal-snapplat	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	40.1642	32.5939	52.3148	73.3785	720	1489	904	824	648	78.6408
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	74.0439	75.2066	72.9167	67.8332	728	240	630	234	184	78.6325
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	45.9396	39.7316	54.4469	43.4180	5477	8308	5626	4707	3701	78.6276
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	60.1585	64.6439	56.2551	36.6040	9449	5168	18693	14536	11429	78.6255
hfeng-pmm3	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	94.1239	92.6980	95.5943	77.1597	3745	295	3450	159	125	78.6164
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	33.6989	27.4371	43.6639	50.1227	1669	4414	2219	2863	2250	78.5889
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	96.1730	94.0088	98.4392	67.8764	45379	2892	60357	957	752	78.5789
anovak-vg	SNP	ti	HG002compoundhet	*	77.8164	75.3290	80.4737	38.3806	13166	4312	13522	3281	2578	78.5736
anovak-vg	INDEL	I6_15	segdup	*	45.2111	40.5714	51.0490	89.3838	71	104	73	70	55	78.5714
anovak-vg	SNP	tv	func_cds	homalt	98.9685	98.7676	99.1701	25.0222	1683	21	1673	14	11	78.5714
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	20.5715	13.2114	46.4481	71.1356	65	427	85	98	77	78.5714
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	52.0833	43.8596	64.1026	99.3572	25	32	25	14	11	78.5714
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1285	99.7807	98.4848	70.2320	910	2	910	14	11	78.5714
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	95.5306	93.3042	97.8659	82.3181	641	46	642	14	11	78.5714
astatham-gatk	SNP	*	map_l125_m0_e0	homalt	99.0469	98.3164	99.7883	67.5212	6599	113	6599	14	11	78.5714
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	98.7388	98.0035	99.4851	62.3094	1669	34	2705	14	11	78.5714
ckim-gatk	INDEL	D16_PLUS	*	homalt	99.0314	99.7045	98.3673	70.9863	1687	5	1687	28	22	78.5714
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6910	99.5997	97.7987	75.1563	1244	5	1244	28	22	78.5714
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6910	99.5997	97.7987	75.1563	1244	5	1244	28	22	78.5714
ckim-gatk	INDEL	D6_15	HG002complexvar	het	99.0142	98.9423	99.0862	59.4709	3087	33	3036	28	22	78.5714
ciseli-custom	INDEL	D16_PLUS	map_l100_m1_e0	homalt	51.2821	66.6667	41.6667	90.1639	10	5	10	14	11	78.5714
ciseli-custom	INDEL	D16_PLUS	map_l100_m2_e0	homalt	53.6585	68.7500	44.0000	90.2724	11	5	11	14	11	78.5714
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	7.6190	4.5977	22.2222	91.6667	4	83	4	14	11	78.5714
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	12.6208	7.7147	34.6667	87.4161	53	634	52	98	77	78.5714
ciseli-custom	INDEL	I1_5	map_l100_m1_e0	homalt	54.1379	40.1544	83.0645	82.5475	208	310	206	42	33	78.5714
ciseli-custom	INDEL	I1_5	map_l125_m0_e0	*	56.0912	49.6774	64.4068	91.5984	154	156	152	84	66	78.5714
ciseli-custom	SNP	*	map_l100_m1_e0	homalt	90.3629	89.6308	91.1071	60.1980	24203	2800	24096	2352	1848	78.5714
gduggal-snapvard	INDEL	I1_5	func_cds	*	92.6851	92.7778	92.5926	34.6021	167	13	175	14	11	78.5714
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	12.5000	100.0000	6.6667	88.9706	1	0	1	14	11	78.5714
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	50.4626	34.9887	90.4762	43.6782	155	288	133	14	11	78.5714
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.7242	88.2707	97.6510	77.3039	587	78	582	14	11	78.5714
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.1541	94.6964	99.7428	58.3391	5428	304	5429	14	11	78.5714
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.9813	98.1884	99.7871	45.7254	6558	121	6563	14	11	78.5714
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.1693	98.8590	99.4815	88.1277	2686	31	2686	14	11	78.5714
egarrison-hhga	INDEL	D16_PLUS	map_l100_m1_e0	*	79.1409	75.8621	82.7160	87.3635	66	21	67	14	11	78.5714
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.3003	96.8730	99.7704	41.9223	6072	196	6083	14	11	78.5714
ckim-vqsr	INDEL	D16_PLUS	*	homalt	99.0314	99.7045	98.3673	70.9863	1687	5	1687	28	22	78.5714

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