PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15751-15800 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.7142 | 99.2593 | 98.1752 | 59.8829 | 268 | 2 | 269 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 62.1033 | 45.2072 | 99.1667 | 43.6090 | 731 | 886 | 595 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | homalt | 99.6826 | 99.4932 | 99.8728 | 70.1019 | 3926 | 20 | 3926 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | homalt | 99.6933 | 99.5102 | 99.8771 | 72.6980 | 4063 | 20 | 4063 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | homalt | 99.6971 | 99.5162 | 99.8786 | 72.6929 | 4114 | 20 | 4114 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 93.8071 | 88.7770 | 99.4413 | 46.0843 | 2381 | 301 | 890 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | homalt | 99.6639 | 99.4041 | 99.9251 | 65.7800 | 6672 | 40 | 6672 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | homalt | 99.5584 | 99.2419 | 99.8769 | 71.8698 | 4058 | 31 | 4057 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 87.1287 | 93.6170 | 81.4815 | 63.5135 | 44 | 3 | 44 | 10 | 8 | 80.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | * | 64.0388 | 51.4948 | 84.6626 | 83.0385 | 689 | 649 | 690 | 125 | 100 | 80.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1404 | 95.8042 | 96.4789 | 92.5654 | 137 | 6 | 137 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9423 | 99.0599 | 98.8249 | 87.6792 | 843 | 8 | 841 | 10 | 8 | 80.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1395 | 99.1848 | 99.0942 | 85.7787 | 1095 | 9 | 1094 | 10 | 8 | 80.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002complexvar | het | 99.5249 | 99.3402 | 99.7103 | 55.5097 | 20628 | 137 | 20652 | 60 | 48 | 80.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1506 | 93.3555 | 99.1182 | 52.8678 | 562 | 40 | 562 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8636 | 98.0031 | 99.7394 | 39.6351 | 1914 | 39 | 1914 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.6757 | 64.3678 | 91.8033 | 82.6705 | 56 | 31 | 56 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5467 | 100.0000 | 99.0975 | 80.6361 | 549 | 0 | 549 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.4511 | 98.9430 | 97.9639 | 73.8833 | 1685 | 18 | 1684 | 35 | 28 | 80.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.2832 | 58.3269 | 98.5549 | 37.2051 | 753 | 538 | 682 | 10 | 8 | 80.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 70.4512 | 54.9658 | 98.0843 | 26.8908 | 321 | 263 | 256 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.3508 | 91.6667 | 95.0980 | 76.7654 | 99 | 9 | 97 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.5348 | 97.9964 | 99.0792 | 78.0340 | 538 | 11 | 538 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.7050 | 91.2434 | 96.3031 | 57.7013 | 521 | 50 | 521 | 20 | 16 | 80.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6585 | 93.5681 | 91.7665 | 71.7189 | 611 | 42 | 613 | 55 | 44 | 80.0000 | |
| ndellapenna-hhga | SNP | * | * | homalt | 99.9243 | 99.8838 | 99.9648 | 18.1151 | 1178790 | 1371 | 1178818 | 415 | 332 | 80.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6385 | 99.6385 | 99.6385 | 58.9249 | 1378 | 5 | 1378 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | homalt | 99.6765 | 99.4406 | 99.9135 | 60.1441 | 11555 | 65 | 11555 | 10 | 8 | 80.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.4384 | 95.9432 | 96.9388 | 58.1197 | 473 | 20 | 475 | 15 | 12 | 80.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.7778 | 19.2308 | 50.0000 | 95.0739 | 5 | 21 | 5 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | homalt | 76.1905 | 76.1905 | 76.1905 | 90.2326 | 16 | 5 | 16 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.3483 | 92.8571 | 95.8882 | 60.8247 | 585 | 45 | 583 | 25 | 20 | 80.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | * | 61.3139 | 51.8519 | 75.0000 | 90.5213 | 14 | 13 | 15 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002complexvar | het | 98.1424 | 96.5605 | 99.7771 | 58.4090 | 2274 | 81 | 2238 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | homalt | 99.4913 | 99.1670 | 99.8177 | 71.1111 | 2738 | 23 | 2738 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6778 | 97.5906 | 99.7894 | 64.3361 | 4739 | 117 | 4739 | 10 | 8 | 80.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.8500 | 94.7664 | 99.0272 | 74.3896 | 507 | 28 | 509 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | homalt | 98.4183 | 98.5915 | 98.2456 | 87.8361 | 280 | 4 | 280 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | homalt | 99.2348 | 99.6454 | 98.8277 | 68.4541 | 1686 | 6 | 1686 | 20 | 16 | 80.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 75.4415 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9650 | 99.5196 | 98.4165 | 72.8445 | 1243 | 6 | 1243 | 20 | 16 | 80.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9650 | 99.5196 | 98.4165 | 72.8445 | 1243 | 6 | 1243 | 20 | 16 | 80.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7226 | 94.2424 | 95.2077 | 70.8837 | 311 | 19 | 298 | 15 | 12 | 80.0000 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | homalt | 98.4759 | 98.0519 | 98.9035 | 88.0940 | 453 | 9 | 451 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | * | map_l150_m2_e0 | homalt | 98.5364 | 98.1289 | 98.9474 | 89.1453 | 472 | 9 | 470 | 5 | 4 | 80.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 56.4570 | 44.2786 | 77.8761 | 77.2177 | 89 | 112 | 88 | 25 | 20 | 80.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 46.1538 | 80.0000 | 32.4324 | 96.0512 | 12 | 3 | 12 | 25 | 20 | 80.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 52.3810 | 68.7500 | 42.3077 | 90.1515 | 11 | 5 | 11 | 15 | 12 | 80.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 78.3964 | 77.1930 | 79.6380 | 89.0810 | 176 | 52 | 176 | 45 | 36 | 80.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 9.4488 | 5.6604 | 28.5714 | 87.7907 | 6 | 100 | 6 | 15 | 12 | 80.0000 | |