PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15251-15300 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 90.8083 | 87.4974 | 94.3796 | 47.9598 | 37917 | 5418 | 37363 | 2225 | 1830 | 82.2472 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.6081 | 99.5736 | 81.4558 | 88.2628 | 467 | 2 | 470 | 107 | 88 | 82.2430 | |
| qzeng-custom | SNP | tv | map_l250_m2_e0 | * | 77.9675 | 67.2797 | 92.6923 | 95.3450 | 1939 | 943 | 1928 | 152 | 125 | 82.2368 | |
| qzeng-custom | SNP | tv | map_l250_m2_e1 | * | 78.0956 | 67.4211 | 92.7860 | 95.3708 | 1966 | 950 | 1955 | 152 | 125 | 82.2368 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.5616 | 97.8195 | 87.8400 | 82.6726 | 1301 | 29 | 1098 | 152 | 125 | 82.2368 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 90.5655 | 92.3733 | 88.8270 | 56.6366 | 16460 | 1359 | 15479 | 1947 | 1601 | 82.2291 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | homalt | 61.1296 | 56.0976 | 67.1533 | 85.8617 | 92 | 72 | 92 | 45 | 37 | 82.2222 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 6.0167 | 3.3981 | 26.2295 | 42.4528 | 7 | 199 | 32 | 90 | 74 | 82.2222 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | het | 83.6864 | 74.4284 | 95.5746 | 89.7620 | 5469 | 1879 | 5464 | 253 | 208 | 82.2134 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.5482 | 82.0297 | 77.2125 | 65.3284 | 3314 | 726 | 2914 | 860 | 707 | 82.2093 | |
| cchapple-custom | INDEL | D1_5 | HG002complexvar | het | 99.3604 | 99.0657 | 99.6568 | 53.2015 | 20571 | 194 | 21196 | 73 | 60 | 82.1918 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8169 | 98.9467 | 98.6874 | 61.3838 | 10991 | 117 | 10977 | 146 | 120 | 82.1918 | |
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4266 | 96.8812 | 94.0151 | 79.6225 | 3914 | 126 | 3613 | 230 | 189 | 82.1739 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.4854 | 99.1784 | 76.6727 | 86.8957 | 845 | 7 | 848 | 258 | 212 | 82.1705 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 44.3323 | 30.1494 | 83.7121 | 76.2590 | 666 | 1543 | 663 | 129 | 106 | 82.1705 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.4763 | 84.1506 | 91.0757 | 53.9857 | 5320 | 1002 | 9889 | 969 | 796 | 82.1465 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.4763 | 84.1506 | 91.0757 | 53.9857 | 5320 | 1002 | 9889 | 969 | 796 | 82.1465 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 73.1367 | 73.8749 | 72.4131 | 44.0488 | 4974 | 1759 | 7145 | 2722 | 2236 | 82.1455 | |
| jli-custom | INDEL | I6_15 | HG002complexvar | * | 98.1083 | 96.8489 | 99.4008 | 55.2909 | 4641 | 151 | 4645 | 28 | 23 | 82.1429 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.5138 | 96.0416 | 99.0318 | 51.5497 | 2863 | 118 | 2864 | 28 | 23 | 82.1429 | |
| egarrison-hhga | SNP | tv | HG002complexvar | homalt | 99.8748 | 99.8086 | 99.9410 | 22.7459 | 94929 | 182 | 94938 | 56 | 46 | 82.1429 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.3335 | 93.6712 | 99.1515 | 51.7685 | 3271 | 221 | 3272 | 28 | 23 | 82.1429 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3915 | 95.8068 | 99.0295 | 51.2175 | 2856 | 125 | 2857 | 28 | 23 | 82.1429 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 81.5850 | 69.5556 | 98.6454 | 38.9545 | 1894 | 829 | 2039 | 28 | 23 | 82.1429 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 82.8947 | 98.6945 | 71.4556 | 84.9886 | 378 | 5 | 378 | 151 | 124 | 82.1192 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.5003 | 95.5391 | 97.4811 | 71.7827 | 4776 | 223 | 4760 | 123 | 101 | 82.1138 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.5003 | 95.5391 | 97.4811 | 71.7827 | 4776 | 223 | 4760 | 123 | 101 | 82.1138 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.9441 | 99.3912 | 87.2825 | 81.4778 | 653 | 4 | 652 | 95 | 78 | 82.1053 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | * | 97.3122 | 96.7874 | 97.8426 | 54.8110 | 31664 | 1051 | 31656 | 698 | 573 | 82.0917 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.5477 | 35.3061 | 33.8212 | 42.2578 | 173 | 317 | 647 | 1266 | 1039 | 82.0695 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5400 | 99.2100 | 99.8721 | 70.2148 | 30518 | 243 | 30461 | 39 | 32 | 82.0513 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.1156 | 95.4467 | 98.8438 | 53.2567 | 3333 | 159 | 3334 | 39 | 32 | 82.0513 | |
| cchapple-custom | SNP | ti | HG002compoundhet | * | 99.2669 | 98.9816 | 99.5539 | 35.4095 | 17300 | 178 | 17406 | 78 | 64 | 82.0513 | |
| mlin-fermikit | SNP | tv | map_siren | * | 81.3085 | 72.1446 | 93.1393 | 50.3116 | 33136 | 12794 | 33125 | 2440 | 2002 | 82.0492 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.9085 | 96.6244 | 99.2272 | 64.2470 | 63145 | 2206 | 62918 | 490 | 402 | 82.0408 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.9085 | 96.6244 | 99.2272 | 64.2470 | 63145 | 2206 | 62918 | 490 | 402 | 82.0408 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.2180 | 98.6853 | 93.8711 | 58.0279 | 16213 | 216 | 34875 | 2277 | 1868 | 82.0378 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.2599 | 99.8263 | 91.0930 | 68.6491 | 3449 | 6 | 3467 | 339 | 278 | 82.0059 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.6190 | 95.4920 | 93.7617 | 82.9704 | 1737 | 82 | 1503 | 100 | 82 | 82.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.6190 | 95.4920 | 93.7617 | 82.9704 | 1737 | 82 | 1503 | 100 | 82 | 82.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002complexvar | * | 99.3540 | 98.8640 | 99.8488 | 56.1047 | 32984 | 379 | 33026 | 50 | 41 | 82.0000 | |
| ckim-vqsr | INDEL | I1_5 | HG002complexvar | * | 99.3737 | 98.9030 | 99.8489 | 56.8918 | 32997 | 366 | 33042 | 50 | 41 | 82.0000 | |
| qzeng-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 5.3812 | 100.0000 | 2.7650 | 59.0566 | 3 | 0 | 6 | 211 | 173 | 81.9905 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.8271 | 96.9609 | 92.7851 | 60.5360 | 3350 | 105 | 3498 | 272 | 223 | 81.9853 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | homalt | 99.2787 | 99.5826 | 98.9767 | 38.6655 | 10737 | 45 | 10736 | 111 | 91 | 81.9820 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.7783 | 97.2753 | 98.2865 | 69.9578 | 2392 | 67 | 3499 | 61 | 50 | 81.9672 | |
| ckim-isaac | INDEL | D6_15 | HG002compoundhet | hetalt | 90.9387 | 83.9774 | 99.1585 | 17.7185 | 6845 | 1306 | 7188 | 61 | 50 | 81.9672 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 57.0043 | 54.0284 | 60.3272 | 41.7857 | 114 | 97 | 295 | 194 | 159 | 81.9588 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.4560 | 79.2319 | 66.7478 | 27.2137 | 557 | 146 | 823 | 410 | 336 | 81.9512 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.5433 | 76.2190 | 97.4669 | 52.9093 | 7894 | 2463 | 7888 | 205 | 168 | 81.9512 | |