PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 299 300 301 302 303 304 305 306 307 ... 1720 1721 » 15101-15150 / 86044 show all
gduggal-bwaplat	INDEL	I16_PLUS	*	*	72.4372	57.6760	97.3531	65.4535	3678	2699	3678	100	83	83.0000
ndellapenna-hhga	INDEL	*	HG002compoundhet	hetalt	85.1313	74.5631	99.1899	56.3007	18775	6405	18000	147	122	82.9932
jlack-gatk	INDEL	D1_5	HG002compoundhet	het	92.3786	97.8009	87.5259	78.5190	1690	38	1691	241	200	82.9876
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	63.0485	48.1459	91.3123	63.3492	4025	4335	4015	382	317	82.9843
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	63.0485	48.1459	91.3123	63.3492	4025	4335	4015	382	317	82.9843
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.7382	91.0643	98.7211	59.2029	3628	356	3628	47	39	82.9787
anovak-vg	SNP	*	map_l125_m1_e0	homalt	89.5021	81.4552	99.3132	65.1171	13770	3135	13593	94	78	82.9787
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	23.1772	16.4208	39.3809	42.5111	345	1756	458	705	585	82.9787
mlin-fermikit	INDEL	D1_5	map_l100_m0_e0	*	68.2636	57.4739	84.0407	76.2404	496	367	495	94	78	82.9787
qzeng-custom	SNP	tv	map_l125_m1_e0	het	85.2256	76.2789	96.5500	86.2555	7724	2402	7724	276	229	82.9710
raldana-dualsentieon	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.6617	94.2604	99.1884	62.0692	5009	305	5011	41	34	82.9268
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.6054	94.5304	98.7736	51.8161	3301	191	3302	41	34	82.9268
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	63.6275	87.0968	50.1217	72.1733	54	8	206	205	170	82.9268
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.5751	94.4731	98.7728	51.8310	3299	193	3300	41	34	82.9268
ciseli-custom	INDEL	I1_5	HG002compoundhet	het	44.8253	57.3616	36.7858	80.5882	487	362	998	1715	1422	82.9155
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	23.2825	16.1074	41.9847	51.3011	24	125	55	76	63	82.8947
gduggal-bwavard	INDEL	D6_15	map_l100_m2_e1	*	67.9623	66.1818	69.8413	89.4073	182	93	176	76	63	82.8947
gduggal-bwavard	INDEL	D6_15	map_l100_m2_e1	het	77.2912	99.2593	63.2850	90.3316	134	1	131	76	63	82.8947
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	86.1189	91.5878	81.2663	80.6056	871	80	937	216	179	82.8704
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.3271	94.3866	98.3491	65.6458	2085	124	2085	35	29	82.8571
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0441	98.5197	99.5742	73.0561	32744	492	32737	140	116	82.8571
gduggal-bwavard	INDEL	D6_15	map_l100_m1_e0	*	68.5128	66.6667	70.4641	88.9767	172	86	167	70	58	82.8571
gduggal-bwavard	INDEL	D6_15	map_l100_m1_e0	het	77.6064	99.2063	63.7306	90.0052	125	1	123	70	58	82.8571
gduggal-bwavard	INDEL	D6_15	map_l100_m2_e0	*	69.2012	67.4242	71.0744	89.5419	178	86	172	70	58	82.8571
gduggal-bwavard	INDEL	D6_15	map_l100_m2_e0	het	78.1594	99.2366	64.4670	90.5379	130	1	127	70	58	82.8571
eyeh-varpipe	INDEL	I1_5	segdup	*	95.8185	94.8064	96.8525	93.2732	1004	55	1077	35	29	82.8571
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	68.7500	53.2425	97.0034	79.7187	1133	995	1133	35	29	82.8571
ciseli-custom	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	32.7016	22.2672	61.5385	82.5000	55	192	56	35	29	82.8571
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7466	96.0553	99.4986	53.1009	2362	97	6945	35	29	82.8571
ndellapenna-hhga	SNP	ti	HG002compoundhet	*	98.5659	98.1119	99.0241	34.3630	17148	330	17148	169	140	82.8402
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	86.6705	87.5205	85.8369	72.0400	533	76	600	99	82	82.8283
egarrison-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	82.4573	73.9961	93.1034	68.3567	2635	926	2673	198	164	82.8283
eyeh-varpipe	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_11to50	*	0.0000	0.0000	80.0000	94.8570	0	0	256	64	53	82.8125
ghariani-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	83.7845	74.5493	95.6314	66.3759	1406	480	1401	64	53	82.8125
ghariani-varprowl	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	65.9654	55.6526	80.9698	74.3202	8669	6908	8633	2029	1680	82.7994
qzeng-custom	SNP	ti	map_l125_m1_e0	het	82.7364	72.3585	96.5897	86.1572	13217	5049	13170	465	385	82.7957
ckim-dragen	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.4189	94.5959	94.2426	73.7195	2013	115	1997	122	101	82.7869
ghariani-varprowl	SNP	*	HG002compoundhet	homalt	89.8311	99.8331	81.6508	42.6198	10764	18	10773	2421	2004	82.7757
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.0062	95.1023	98.9878	50.0871	2835	146	2836	29	24	82.7586
ckim-isaac	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	84.8488	74.6492	98.2769	53.8272	1649	560	1654	29	24	82.7586
ciseli-custom	INDEL	D1_5	map_l125_m0_e0	homalt	78.7671	77.7027	79.8611	87.8069	115	33	115	29	24	82.7586
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.4527	93.8414	99.2135	55.2222	3657	240	3658	29	24	82.7586
ndellapenna-hhga	INDEL	I16_PLUS	*	hetalt	89.6769	82.4118	98.3466	51.6538	1729	369	1725	29	24	82.7586
ckim-isaac	SNP	ti	HG002compoundhet	homalt	91.0386	83.8788	99.5347	26.2921	6202	1192	6203	29	24	82.7586
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	94.6365	93.5989	95.6973	34.7531	658	45	645	29	24	82.7586
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	93.0591	87.6396	99.1931	21.1150	3531	498	3565	29	24	82.7586
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7987	99.8821	99.7155	54.3488	10166	12	10164	29	24	82.7586
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.8137	96.5992	99.0592	63.6797	6107	215	6107	58	48	82.7586
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.8137	96.5992	99.0592	63.6797	6107	215	6107	58	48	82.7586
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.9709	95.0352	98.9871	50.1046	2833	148	2834	29	24	82.7586

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge