PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15101-15150 / 86044 show all
gduggal-bwaplatINDELI16_PLUS**
72.4372
57.6760
97.3531
65.4535
36782699367810083
83.0000
ndellapenna-hhgaINDEL*HG002compoundhethetalt
85.1313
74.5631
99.1899
56.3007
18775640518000147122
82.9932
jlack-gatkINDELD1_5HG002compoundhethet
92.3786
97.8009
87.5259
78.5190
1690381691241200
82.9876
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
63.0485
48.1459
91.3123
63.3492
402543354015382317
82.9843
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
63.0485
48.1459
91.3123
63.3492
402543354015382317
82.9843
hfeng-pmm2INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.7382
91.0643
98.7211
59.2029
362835636284739
82.9787
anovak-vgSNP*map_l125_m1_e0homalt
89.5021
81.4552
99.3132
65.1171
137703135135939478
82.9787
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_51to200*
23.1772
16.4208
39.3809
42.5111
3451756458705585
82.9787
mlin-fermikitINDELD1_5map_l100_m0_e0*
68.2636
57.4739
84.0407
76.2404
4963674959478
82.9787
qzeng-customSNPtvmap_l125_m1_e0het
85.2256
76.2789
96.5500
86.2555
772424027724276229
82.9710
raldana-dualsentieonINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.6617
94.2604
99.1884
62.0692
500930550114134
82.9268
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.6054
94.5304
98.7736
51.8161
330119133024134
82.9268
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
63.6275
87.0968
50.1217
72.1733
548206205170
82.9268
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.5751
94.4731
98.7728
51.8310
329919333004134
82.9268
ciseli-customINDELI1_5HG002compoundhethet
44.8253
57.3616
36.7858
80.5882
48736299817151422
82.9155
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
23.2825
16.1074
41.9847
51.3011
24125557663
82.8947
gduggal-bwavardINDELD6_15map_l100_m2_e1*
67.9623
66.1818
69.8413
89.4073
182931767663
82.8947
gduggal-bwavardINDELD6_15map_l100_m2_e1het
77.2912
99.2593
63.2850
90.3316
13411317663
82.8947
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
86.1189
91.5878
81.2663
80.6056
87180937216179
82.8704
rpoplin-dv42INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.3271
94.3866
98.3491
65.6458
208512420853529
82.8571
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0441
98.5197
99.5742
73.0561
3274449232737140116
82.8571
gduggal-bwavardINDELD6_15map_l100_m1_e0*
68.5128
66.6667
70.4641
88.9767
172861677058
82.8571
gduggal-bwavardINDELD6_15map_l100_m1_e0het
77.6064
99.2063
63.7306
90.0052
12511237058
82.8571
gduggal-bwavardINDELD6_15map_l100_m2_e0*
69.2012
67.4242
71.0744
89.5419
178861727058
82.8571
gduggal-bwavardINDELD6_15map_l100_m2_e0het
78.1594
99.2366
64.4670
90.5379
13011277058
82.8571
eyeh-varpipeINDELI1_5segdup*
95.8185
94.8064
96.8525
93.2732
10045510773529
82.8571
gduggal-bwaplatINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
68.7500
53.2425
97.0034
79.7187
113399511333529
82.8571
ciseli-customINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
32.7016
22.2672
61.5385
82.5000
55192563529
82.8571
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.7466
96.0553
99.4986
53.1009
23629769453529
82.8571
ndellapenna-hhgaSNPtiHG002compoundhet*
98.5659
98.1119
99.0241
34.3630
1714833017148169140
82.8402
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
86.6705
87.5205
85.8369
72.0400
533766009982
82.8283
egarrison-hhgaINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
82.4573
73.9961
93.1034
68.3567
26359262673198164
82.8283
eyeh-varpipeINDELC1_5lowcmp_SimpleRepeat_diTR_11to50*
0.0000
0.0000
80.0000
94.8570
002566453
82.8125
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
83.7845
74.5493
95.6314
66.3759
140648014016453
82.8125
ghariani-varprowlINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
65.9654
55.6526
80.9698
74.3202
86696908863320291680
82.7994
qzeng-customSNPtimap_l125_m1_e0het
82.7364
72.3585
96.5897
86.1572
13217504913170465385
82.7957
ckim-dragenINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.4189
94.5959
94.2426
73.7195
20131151997122101
82.7869
ghariani-varprowlSNP*HG002compoundhethomalt
89.8311
99.8331
81.6508
42.6198
10764181077324212004
82.7757
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.0062
95.1023
98.9878
50.0871
283514628362924
82.7586
ckim-isaacINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
84.8488
74.6492
98.2769
53.8272
164956016542924
82.7586
ciseli-customINDELD1_5map_l125_m0_e0homalt
78.7671
77.7027
79.8611
87.8069
115331152924
82.7586
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4527
93.8414
99.2135
55.2222
365724036582924
82.7586
ndellapenna-hhgaINDELI16_PLUS*hetalt
89.6769
82.4118
98.3466
51.6538
172936917252924
82.7586
ckim-isaacSNPtiHG002compoundhethomalt
91.0386
83.8788
99.5347
26.2921
6202119262032924
82.7586
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
94.6365
93.5989
95.6973
34.7531
658456452924
82.7586
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
93.0591
87.6396
99.1931
21.1150
353149835652924
82.7586
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7987
99.8821
99.7155
54.3488
1016612101642924
82.7586
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8137
96.5992
99.0592
63.6797
610721561075848
82.7586
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8137
96.5992
99.0592
63.6797
610721561075848
82.7586
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.9709
95.0352
98.9871
50.1046
283314828342924
82.7586