PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15051-15100 / 86044 show all
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.5313
97.5124
99.5716
47.3892
5881527891210
83.3333
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.6256
98.1818
99.0734
84.3863
12422312831210
83.3333
gduggal-bwavardSNPtiHG002compoundhet*
84.8363
81.4967
88.4613
41.1291
1424432341429818651554
83.3244
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
33.8729
24.3264
55.7519
39.1474
9482949173513771147
83.2970
qzeng-customSNPtimap_l100_m0_e0het
81.5587
70.9290
95.9360
86.8580
991840659891419349
83.2936
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
36.4602
27.1762
55.3790
36.8827
25668613591095912
83.2877
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
77.1982
70.9029
84.7203
46.8070
67062752683112321026
83.2792
hfeng-pmm2INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.2602
91.5616
97.1227
66.9273
92238509080269224
83.2714
qzeng-customSNPtimap_l125_m2_e1*
83.3343
72.6815
97.6462
82.9373
22218835122070532443
83.2707
ckim-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.4384
96.9802
93.9449
79.5374
39181223615233194
83.2618
gduggal-bwavardSNPtiHG002compoundhethet
83.9896
84.9027
83.0960
44.5406
80701435910418521542
83.2613
qzeng-customSNP*map_l100_m0_e0het
82.7631
72.8602
95.7815
86.9859
15450575515326675562
83.2593
qzeng-customSNP*map_l250_m2_e0*
75.7461
64.0330
92.7037
95.4455
504928365006394328
83.2487
anovak-vgINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
31.9699
22.4138
55.7303
40.4682
104360496394328
83.2487
asubramanian-gatkINDEL*HG002compoundhet*
93.4362
93.2377
93.6356
65.8907
2793420262783618921575
83.2452
qzeng-customSNPtimap_l125_m2_e0*
83.2073
72.4998
97.6254
82.9474
21937832121790530441
83.2075
ndellapenna-hhgaINDEL***
97.3838
97.0938
97.6756
75.8762
3345291001333524979786638
83.2038
ghariani-varprowlINDELI6_15HG002complexvarhomalt
84.4108
80.1483
89.1522
51.9071
97324197811999
83.1933
ckim-dragenINDELI16_PLUS**
97.2529
96.3306
98.1932
70.5888
6143234614111394
83.1858
qzeng-customSNPtvmap_l125_m0_e0het
81.8738
72.6880
93.7170
91.2462
319912023192214178
83.1776
ndellapenna-hhgaINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
75.3565
68.2801
84.0693
69.0324
14536751504285237
83.1579
qzeng-customSNP*map_l100_m1_e0*
87.6931
79.1127
98.3611
75.8509
572801512356597943784
83.1389
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
91.5880
92.9697
90.2468
68.7592
767587688369
83.1325
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.5880
92.9697
90.2468
68.7592
767587688369
83.1325
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0024
96.5790
99.4683
68.2096
15527550155288369
83.1325
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0024
96.5790
99.4683
68.2096
15527550155288369
83.1325
qzeng-customSNP*map_l125_m1_e0het
83.6399
73.7567
96.5816
86.1149
20941745120766735611
83.1293
gduggal-snapvardINDELI1_5segduphet
92.0218
96.8401
87.6603
96.3583
521175477764
83.1169
mlin-fermikitINDEL*map_l100_m0_e0homalt
68.0723
66.6012
69.6099
79.4167
339170339148123
83.1081
ciseli-customINDELD1_5map_l125_m2_e0homalt
81.6849
82.4176
80.9651
86.8337
300643027159
83.0986
ciseli-customINDELD1_5map_l125_m2_e1homalt
81.9169
82.5269
81.3158
86.8147
307653097159
83.0986
anovak-vgSNP*map_l150_m2_e0homalt
88.0238
79.0922
99.2294
72.9596
9253244691437159
83.0986
anovak-vgSNP*map_l150_m2_e1homalt
88.0784
79.1748
99.2382
72.9549
9364246392497159
83.0986
ndellapenna-hhgaINDELI6_15HG002compoundhet*
93.3379
91.5109
95.2392
35.4681
80317458042402334
83.0846
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
77.7135
64.0275
98.8407
72.1806
5952334455426554
83.0769
ciseli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
62.9012
59.7110
66.4516
34.9559
10336971030520432
83.0769
qzeng-customSNP*map_l250_m1_e0*
74.6091
62.6419
92.2286
95.4856
452426984486378314
83.0688
qzeng-customSNPtvmap_l100_m1_e0*
88.0506
79.8294
98.1596
77.4096
19559494219521366304
83.0601
qzeng-customSNPtvmap_l150_m0_e0*
79.1205
68.3277
93.9624
92.1942
285213222848183152
83.0601
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
31.2083
26.2195
38.5417
39.6226
431217411898
83.0508
astatham-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.8715
98.1383
99.6157
72.7478
15287290152935949
83.0508
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3373
95.6976
99.0342
63.1411
605027260505949
83.0508
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.3373
95.6976
99.0342
63.1411
605027260505949
83.0508
eyeh-varpipeINDELC6_15HG002complexvar*
91.6784
100.0000
84.6354
83.7632
403255949
83.0508
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
76.9409
66.2700
91.7077
66.5255
1281652130511898
83.0508
ciseli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
79.7753
86.5705
73.9693
64.8607
306247530321067886
83.0366
ndellapenna-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4059
99.3368
99.4750
48.7096
1003567100435344
83.0189
eyeh-varpipeINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
66.0256
95.9130
001035344
83.0189
jli-customINDELI1_5HG002compoundhethet
95.4593
97.4118
93.5835
85.3129
828227735344
83.0189
ciseli-customINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
81.2972
84.9765
77.9232
58.9542
905160893253210
83.0040