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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14051-14100 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 74.7342 | 66.9196 | 84.6154 | 62.9705 | 882 | 436 | 924 | 168 | 144 | 85.7143 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 89.5949 | 92.3077 | 87.0370 | 80.0738 | 48 | 4 | 47 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | * | 46.3768 | 34.7826 | 69.5652 | 93.9153 | 16 | 30 | 16 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 57.4807 | 40.4480 | 99.2929 | 38.4711 | 957 | 1409 | 983 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.9769 | 97.9769 | 97.9769 | 76.3823 | 339 | 7 | 339 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | * | 71.1252 | 62.2642 | 82.9268 | 83.4677 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | * | 71.1252 | 62.2642 | 82.9268 | 86.1017 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | * | 71.1252 | 62.2642 | 82.9268 | 86.6013 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 85.4369 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.4884 | 91.0628 | 98.1818 | 71.3328 | 377 | 37 | 378 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.5736 | 100.0000 | 89.7059 | 90.0439 | 61 | 0 | 61 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | SNP | ti | HG002compoundhet | * | 99.6565 | 99.5938 | 99.7193 | 35.2092 | 17407 | 71 | 17405 | 49 | 42 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7425 | 99.6656 | 99.8196 | 59.9732 | 3874 | 13 | 3874 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | homalt | 99.7180 | 99.5563 | 99.8802 | 65.8321 | 5834 | 26 | 5834 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | homalt | 99.7253 | 99.5679 | 99.8833 | 68.5442 | 5991 | 26 | 5991 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | homalt | 99.7279 | 99.5719 | 99.8844 | 68.5879 | 6048 | 26 | 6048 | 7 | 6 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.4879 | 79.8982 | 99.1469 | 44.6823 | 13347 | 3358 | 3254 | 28 | 24 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 88.1620 | 79.3519 | 99.1726 | 31.2754 | 10922 | 2842 | 2517 | 21 | 18 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.4879 | 79.8982 | 99.1469 | 44.6823 | 13347 | 3358 | 3254 | 28 | 24 | 85.7143 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 66.6667 | 75.0000 | 60.0000 | 90.9561 | 21 | 7 | 21 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 67.6923 | 75.8621 | 61.1111 | 90.8397 | 22 | 7 | 22 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | I1_5 | func_cds | homalt | 91.8455 | 89.9160 | 93.8596 | 19.1489 | 107 | 12 | 107 | 7 | 6 | 85.7143 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 63.6010 | 58.1362 | 70.1998 | 85.9497 | 811 | 584 | 808 | 343 | 294 | 85.7143 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 48.9837 | 34.5566 | 84.0909 | 86.4615 | 113 | 214 | 111 | 21 | 18 | 85.7143 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 98.1189 | 97.4026 | 98.8458 | 61.2336 | 1200 | 32 | 1199 | 14 | 12 | 85.7143 | |
| ckim-gatk | INDEL | I16_PLUS | * | hetalt | 95.7167 | 92.0877 | 99.6434 | 54.9150 | 1932 | 166 | 1956 | 7 | 6 | 85.7143 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.3747 | 93.0131 | 97.8593 | 82.1067 | 639 | 48 | 640 | 14 | 12 | 85.7143 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3045 | 99.1512 | 99.4582 | 87.3902 | 1285 | 11 | 1285 | 7 | 6 | 85.7143 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2958 | 99.4125 | 99.1794 | 88.4605 | 846 | 5 | 846 | 7 | 6 | 85.7143 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 84.5989 | 77.2532 | 93.4884 | 70.0139 | 180 | 53 | 201 | 14 | 12 | 85.7143 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 89.3587 | 81.9106 | 98.2968 | 40.7781 | 403 | 89 | 404 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.2727 | 100.0000 | 77.4194 | 74.5902 | 24 | 0 | 24 | 7 | 6 | 85.7143 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.6256 | 97.1429 | 98.1132 | 79.1104 | 374 | 11 | 364 | 7 | 6 | 85.7143 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5033 | 96.1905 | 98.8525 | 65.9408 | 606 | 24 | 603 | 7 | 6 | 85.7143 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7412 | 99.7085 | 99.7738 | 68.8882 | 3079 | 9 | 3088 | 7 | 6 | 85.7143 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.7963 | 98.1618 | 97.4335 | 57.5156 | 1068 | 20 | 1063 | 28 | 24 | 85.7143 | |
| cchapple-custom | INDEL | D1_5 | HG002complexvar | * | 99.2131 | 98.7865 | 99.6433 | 53.2355 | 32318 | 397 | 31288 | 112 | 96 | 85.7143 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 60.2265 | 64.3636 | 56.5891 | 50.4418 | 531 | 294 | 730 | 560 | 480 | 85.7143 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 60.2265 | 64.3636 | 56.5891 | 50.4418 | 531 | 294 | 730 | 560 | 480 | 85.7143 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.2866 | 9.6774 | 36.3636 | 52.5862 | 18 | 168 | 20 | 35 | 30 | 85.7143 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | homalt | 85.5172 | 76.8595 | 96.3731 | 89.4304 | 186 | 56 | 186 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | homalt | 85.6502 | 77.0161 | 96.4646 | 89.3777 | 191 | 57 | 191 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | * | 75.4516 | 68.9320 | 83.3333 | 89.1892 | 71 | 32 | 70 | 14 | 12 | 85.7143 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | * | 21.6216 | 15.3846 | 36.3636 | 80.0000 | 4 | 22 | 4 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 34.2857 | 40.0000 | 30.0000 | 77.2727 | 2 | 3 | 3 | 7 | 6 | 85.7143 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1124 | 95.2081 | 99.0944 | 24.4379 | 755 | 38 | 766 | 7 | 6 | 85.7143 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5501 | 95.9474 | 99.2072 | 89.6154 | 876 | 37 | 876 | 7 | 6 | 85.7143 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.0947 | 93.5620 | 94.6334 | 73.4309 | 1991 | 137 | 1975 | 112 | 96 | 85.7143 | |