PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1301-1350 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.8398 | 91.3242 | 98.6369 | 70.6759 | 800 | 76 | 796 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.7537 | 92.8262 | 98.8719 | 34.2209 | 1501 | 116 | 1490 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.8706 | 92.3291 | 99.6947 | 44.2078 | 662 | 55 | 653 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8154 | 96.2235 | 99.4609 | 53.5902 | 1860 | 73 | 1845 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.3846 | 95.4459 | 99.4036 | 72.5886 | 503 | 24 | 500 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.0137 | 96.8220 | 99.2350 | 34.3144 | 914 | 30 | 908 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.6760 | 92.6622 | 98.8925 | 36.2012 | 1528 | 121 | 1518 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.4391 | 93.3824 | 99.7027 | 51.0669 | 1016 | 72 | 1006 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.7426 | 92.6463 | 99.0529 | 39.5216 | 1789 | 142 | 1778 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.3994 | 93.2746 | 99.7407 | 59.0297 | 1165 | 84 | 1154 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.9977 | 96.8112 | 99.2136 | 36.6279 | 759 | 25 | 757 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.8711 | 79.8639 | 97.6628 | 43.9139 | 587 | 148 | 585 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.2163 | 78.1065 | 93.7500 | 66.1972 | 132 | 37 | 135 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 89.7947 | 82.2323 | 98.8889 | 27.1255 | 361 | 78 | 356 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.6847 | 74.0157 | 98.9474 | 35.8108 | 94 | 33 | 94 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.0362 | 72.0588 | 97.9592 | 95.6980 | 49 | 19 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.0000 | 66.6667 | 85.7143 | 95.2055 | 6 | 3 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3628 | 96.0366 | 98.7261 | 44.4248 | 315 | 13 | 310 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.0103 | 96.5217 | 99.5455 | 56.9472 | 222 | 8 | 219 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.7268 | 93.0195 | 98.5965 | 56.9811 | 573 | 43 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.8690 | 94.5122 | 99.3464 | 73.7564 | 155 | 9 | 152 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9720 | 92.0000 | 98.1424 | 40.7339 | 322 | 28 | 317 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.4668 | 94.1176 | 98.9362 | 52.2843 | 96 | 6 | 93 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.9540 | 86.9565 | 97.5610 | 48.7500 | 40 | 6 | 40 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 75.0000 | 85.7143 | 78.7879 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | hetalt | 98.0424 | 96.5838 | 99.5458 | 62.4013 | 9867 | 349 | 9863 | 45 | 45 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | homalt | 95.9853 | 94.8454 | 97.1530 | 60.6993 | 276 | 15 | 273 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3714 | 93.4840 | 99.4429 | 53.4069 | 703 | 49 | 714 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3352 | 97.2892 | 99.4041 | 71.1873 | 9044 | 252 | 9174 | 55 | 55 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5298 | 99.0776 | 99.9861 | 69.5819 | 21697 | 202 | 21585 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8942 | 97.8828 | 99.9267 | 51.0090 | 8183 | 177 | 8175 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.9526 | 94.2029 | 95.7143 | 65.8537 | 65 | 4 | 67 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.5670 | 91.8919 | 97.4026 | 86.9492 | 68 | 6 | 75 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.6129 | 91.8919 | 97.5000 | 91.7184 | 34 | 3 | 39 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.3716 | 91.7119 | 99.3355 | 36.2626 | 1184 | 107 | 1196 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.6096 | 90.2375 | 99.4269 | 52.7740 | 342 | 37 | 347 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.9874 | 96.4793 | 99.5434 | 33.1326 | 7810 | 285 | 7849 | 36 | 36 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0140 | 98.1239 | 99.9205 | 31.1473 | 5021 | 96 | 5025 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.4378 | 97.3195 | 99.5821 | 32.8253 | 6644 | 183 | 6672 | 28 | 28 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3331 | 98.7166 | 99.9574 | 29.1176 | 4692 | 61 | 4689 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.9633 | 96.4517 | 99.5230 | 36.1107 | 7883 | 290 | 7929 | 38 | 38 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0051 | 98.0989 | 99.9282 | 41.2255 | 5573 | 108 | 5569 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8942 | 97.8828 | 99.9267 | 51.0090 | 8183 | 177 | 8175 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.2925 | 97.1972 | 99.4127 | 32.2154 | 6693 | 193 | 6771 | 40 | 40 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0810 | 98.2062 | 99.9717 | 26.1765 | 7117 | 130 | 7057 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 88.2368 | 79.4297 | 99.2405 | 30.2120 | 390 | 101 | 392 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.4060 | 77.4648 | 95.1613 | 34.0426 | 55 | 16 | 59 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.7529 | 97.3236 | 98.1859 | 78.3718 | 400 | 11 | 433 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.8911 | 98.2585 | 99.5318 | 46.2230 | 1467 | 26 | 1488 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9834 | 98.4772 | 99.4949 | 54.7945 | 194 | 3 | 197 | 1 | 1 | 100.0000 | |