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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13251-13300 / 86044 show all
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.3059
89.5985
99.5353
25.4660
725384272833430
88.2353
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.2746
89.5387
99.5395
27.7522
731885573493430
88.2353
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1875
96.2685
98.1242
59.9927
30236117230236578510
88.2353
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
93.0769
99.1803
87.6812
86.5889
12111211715
88.2353
jlack-gatkSNPtimap_l100_m1_e0homalt
99.3843
98.8697
99.9044
57.5961
17757203177571715
88.2353
jlack-gatkSNPtimap_l100_m2_e0homalt
99.3934
98.8858
99.9062
60.1223
18105204181051715
88.2353
jlack-gatkSNPtimap_l100_m2_e1homalt
99.3913
98.8807
99.9071
60.0864
18287207182871715
88.2353
jli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.3347
93.7357
96.9893
65.2412
94426319310289255
88.2353
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
96.9781
96.7532
97.2039
68.0840
596205911715
88.2353
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
96.8101
96.4286
97.1947
67.9535
594225891715
88.2353
bgallagher-sentieonINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.7733
90.0718
97.7922
67.5516
753837531715
88.2353
asubramanian-gatkINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.8400
87.9187
96.1276
66.5396
7351018443430
88.2353
ltrigg-rtg2INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
87.9958
80.4949
97.0383
67.7165
5531345571715
88.2353
jmaeng-gatkINDELD1_5HG002complexvarhomalt
99.8538
99.8679
99.8397
60.1891
1058414105911715
88.2353
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
73.4050
58.5620
98.3268
40.8270
10677559991715
88.2353
egarrison-hhgaSNPtimap_sirenhomalt
99.8640
99.7732
99.9551
52.1965
3783086378301715
88.2353
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
71.1860
58.6207
90.6077
99.6597
51363283430
88.2353
eyeh-varpipeINDELC6_15HG002compoundhethomalt
0.0000
0.0000
2.8571
84.2342
0013430
88.2353
dgrover-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
96.9781
96.7532
97.2039
68.1675
596205911715
88.2353
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.2925
98.9506
97.6432
71.0801
1763218717235416367
88.2212
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.9297
98.8747
93.1551
69.8469
1142213011432840741
88.2143
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.9297
98.8747
93.1551
69.8469
1142213011432840741
88.2143
mlin-fermikitSNPtimap_l125_m2_e0*
64.0610
50.1091
88.7802
61.1948
15162150961516119161690
88.2046
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
86.2959
82.2171
90.8006
44.5699
32046937531763673
88.2045
jmaeng-gatkINDELD6_15**
97.9970
97.6008
98.3964
55.6203
2546662625465415366
88.1928
ckim-isaacINDELI1_5*hetalt
89.8867
82.5636
98.6351
45.1097
924319529178127112
88.1890
gduggal-bwaplatSNP**homalt
98.9364
97.9135
99.9810
18.7279
1155537246241155217220194
88.1818
mlin-fermikitSNPtimap_l150_m2_e0*
58.1126
43.6427
86.9367
65.5641
895211560895113451186
88.1784
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
57.9068
46.9489
75.5372
67.0120
854965914296261
88.1757
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
57.9068
46.9489
75.5372
67.0120
854965914296261
88.1757
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
64.3216
84.4327
51.9481
54.2348
32059320296261
88.1757
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7273
95.9551
99.5663
48.2367
21350900213519382
88.1720
anovak-vgINDELI16_PLUSHG002complexvarhomalt
54.3276
66.0194
46.1538
39.2523
204105210245216
88.1633
mlin-fermikitSNPtvmap_l250_m1_e0*
43.4641
30.3362
76.6221
76.8295
8031844803245216
88.1633
astatham-gatkSNP**homalt
99.9742
99.9548
99.9936
17.1971
117962753411796037667
88.1579
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
53.8527
45.9807
64.9770
74.1667
1431681417667
88.1579
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
97.9135
97.8996
97.9275
49.2246
35897735917667
88.1579
mlin-fermikitSNPtimap_l150_m2_e1*
58.3031
43.8450
86.9877
65.8089
908611637908513591198
88.1531
gduggal-bwavardINDELD1_5*het
93.4417
99.0111
88.4655
62.3753
8670886685823111909864
88.1501
mlin-fermikitINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
84.5227
93.4426
77.1574
75.5280
45632456135119
88.1481
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.0480
87.7443
94.6101
39.6686
12973181212884734647
88.1471
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
80.3927
81.2870
79.5178
59.9939
93352149933324042119
88.1448
jmaeng-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.8816
95.9653
93.8220
79.5053
38771633584236208
88.1356
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.8202
97.9852
99.6695
59.8782
17800366177925952
88.1356
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.8202
97.9852
99.6695
59.8782
17800366177925952
88.1356
ltrigg-rtg1INDELI6_15*homalt
98.7666
98.4933
99.0414
43.6510
61459460965952
88.1356
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
62.7608
46.6890
95.7058
37.3301
22282544225110189
88.1188
mlin-fermikitSNPtimap_l125_m2_e1*
64.3036
50.3876
88.8389
61.3583
15403151661540219351705
88.1137
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.7480
95.8991
95.5975
81.7695
912399124237
88.0952
cchapple-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
96.7046
95.7031
97.7273
60.0519
17157718064237
88.0952