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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 254 255 256 257 258 259 260 261 262 ... 1720 1721 » 12851-12900 / 86044 show all
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.6596	99.0406	96.3166	82.8425	1342	13	1229	47	42	89.3617
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.5651	93.9933	99.2815	52.4049	6494	415	6494	47	42	89.3617
jli-custom	INDEL	I16_PLUS	HG002compoundhet	*	95.4155	93.2338	97.7017	49.8529	1998	145	1998	47	42	89.3617
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.4797	95.7302	99.2944	52.9989	6614	295	6614	47	42	89.3617
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	0.0000	0.0000	70.6250	95.1427	0	0	113	47	42	89.3617
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	0.0000	70.6250	95.1427	0	0	113	47	42	89.3617
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	79.2028	81.7073	76.8473	78.8981	134	30	156	47	42	89.3617
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	80.9329	94.5455	70.7469	64.8688	312	18	341	141	126	89.3617
mlin-fermikit	SNP	ti	map_l125_m0_e0	*	52.3097	37.7919	84.9392	57.8951	4823	7939	4822	855	764	89.3567
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8871	99.2258	98.5507	63.9239	8331	65	8296	122	109	89.3443
gduggal-bwavard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	82.7813	80.4513	85.2502	40.8125	3280	797	3254	563	503	89.3428
ndellapenna-hhga	SNP	*	HG002complexvar	homalt	99.8626	99.8292	99.8960	19.9404	288081	493	288110	300	268	89.3333
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	79.1116	70.1992	90.6162	65.8002	2855	1212	2897	300	268	89.3333
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	93.1339	90.7869	95.6056	36.5855	10061	1021	9986	459	410	89.3246
anovak-vg	INDEL	*	map_l150_m2_e1	homalt	76.1446	84.3496	69.3944	88.0547	415	77	424	187	167	89.3048
gduggal-bwavard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	88.1251	98.2495	79.8925	44.0994	2245	40	2229	561	501	89.3048
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	85.3685	84.7087	86.0387	70.3107	27100	4892	27621	4482	4002	89.2905
mlin-fermikit	INDEL	I1_5	map_l150_m1_e0	*	61.2987	46.6403	89.3939	82.1138	236	270	236	28	25	89.2857
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	51.9644	35.2064	99.1674	46.2264	3352	6169	3335	28	25	89.2857
gduggal-bwaplat	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	87.1382	78.3947	98.0769	64.9494	2852	786	2856	56	50	89.2857
anovak-vg	SNP	*	map_l150_m0_e0	homalt	84.1702	73.1719	99.0595	77.5693	2992	1097	2949	28	25	89.2857
anovak-vg	SNP	ti	map_siren	homalt	94.0329	89.3343	99.2531	48.3941	33872	4044	33489	252	225	89.2857
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.7778	99.6205	94.0928	82.7887	525	2	446	28	25	89.2857
ckim-dragen	SNP	*	map_l150_m1_e0	homalt	99.4842	99.2194	99.7504	65.7675	11185	88	11190	28	25	89.2857
ckim-dragen	SNP	*	map_l150_m2_e0	homalt	99.4944	99.2307	99.7595	68.4345	11609	90	11614	28	25	89.2857
ckim-dragen	SNP	*	map_l150_m2_e1	homalt	99.4914	99.2221	99.7621	68.4589	11735	92	11740	28	25	89.2857
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.8094	96.1793	99.4957	50.2286	5513	219	5524	28	25	89.2857
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.2768	89.5307	99.5544	31.1699	12323	1441	12511	56	50	89.2857
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.2610	89.4954	99.5627	34.0219	12558	1474	12751	56	50	89.2857
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	95.4396	91.6508	99.5551	24.5986	6257	570	6265	28	25	89.2857
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	70.2572	87.5000	58.6914	56.3300	7315	1045	7266	5114	4566	89.2843
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	70.2572	87.5000	58.6914	56.3300	7315	1045	7266	5114	4566	89.2843
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.3436	96.3164	90.5489	40.3596	7112	272	6879	718	641	89.2758
egarrison-hhga	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	80.4994	78.7352	82.3445	83.8017	7931	2142	8036	1723	1538	89.2629
eyeh-varpipe	INDEL	*	map_l100_m2_e0	homalt	95.0097	96.1935	93.8547	84.5593	1213	48	1848	121	108	89.2562
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	51.7959	37.2013	85.2349	63.2016	1401	2365	1397	242	216	89.2562
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	51.7959	37.2013	85.2349	63.2016	1401	2365	1397	242	216	89.2562
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	75.3208	65.0467	89.4493	64.1933	2088	1122	2128	251	224	89.2430
mlin-fermikit	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.9682	99.6336	96.3576	67.1524	10060	37	10079	381	340	89.2388
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7047	98.0586	97.3534	62.7778	8233	163	8203	223	199	89.2377
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	40.4624	33.1754	51.8519	75.6757	70	141	70	65	58	89.2308
anovak-vg	SNP	*	map_l100_m0_e0	homalt	87.9850	78.9931	99.2870	62.5031	9179	2441	9052	65	58	89.2308
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	78.5618	72.3842	85.8922	52.6470	10702	4083	10825	1778	1586	89.2013
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.6853	98.9657	98.4065	63.1662	15597	163	15439	250	223	89.2000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.7927	97.6562	97.9295	69.6398	1750	42	1750	37	33	89.1892
gduggal-snapvard	INDEL	D1_5	func_cds	*	87.5742	91.8239	83.7004	42.8212	146	13	190	37	33	89.1892
gduggal-snapvard	INDEL	D1_5	func_cds	het	87.2852	100.0000	77.4390	47.4359	85	0	127	37	33	89.1892
ckim-dragen	SNP	*	map_l100_m2_e0	homalt	99.6377	99.4114	99.8650	58.3933	27361	162	27366	37	33	89.1892

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