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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 252 253 254 255 256 257 258 259 260 ... 1720 1721 » 12751-12800 / 86044 show all
gduggal-snapvard	INDEL	*	HG002compoundhet	homalt	74.7625	67.9300	83.1230	59.6178	466	220	527	107	96	89.7196
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	89.4763	93.5448	85.7470	50.2621	4159	287	3742	622	558	89.7106
anovak-vg	INDEL	I1_5	map_l150_m2_e0	homalt	68.6340	94.0299	54.0390	86.8015	189	12	194	165	148	89.6970
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	63.9702	49.9564	88.9115	43.5949	3440	3446	3496	436	391	89.6789
egarrison-hhga	INDEL	*	*	hetalt	84.7197	74.1293	98.8404	62.3270	18708	6529	18156	213	191	89.6714
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	84.2914	83.4336	85.1671	70.9828	31623	6279	32286	5623	5042	89.6674
astatham-gatk	INDEL	D6_15	*	*	98.2985	98.0875	98.5103	54.9898	25593	499	25592	387	347	89.6641
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	77.1234	70.6347	84.9247	50.6689	9737	4048	9864	1751	1570	89.6630
mlin-fermikit	SNP	*	map_l100_m0_e0	*	59.6148	45.9548	84.8308	53.4081	15092	17749	15088	2698	2419	89.6590
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.9394	98.6710	99.2092	50.5195	3638	49	3638	29	26	89.6552
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	het	69.4193	63.9344	75.9336	65.0725	312	176	366	116	104	89.6552
cchapple-custom	INDEL	I16_PLUS	HG002compoundhet	het	93.8692	89.3617	98.8556	50.9675	42	5	2505	29	26	89.6552
gduggal-bwaplat	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	82.8931	71.4423	98.7151	55.3864	2229	891	2228	29	26	89.6552
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	89.7973	90.4000	89.2026	69.9879	2712	288	2875	348	312	89.6552
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	75.3138	61.2245	97.8261	47.4389	300	190	1305	29	26	89.6552
ltrigg-rtg1	SNP	*	map_l100_m2_e0	homalt	99.8182	99.7420	99.8945	62.4790	27452	71	27451	29	26	89.6552
ltrigg-rtg1	SNP	*	map_l100_m2_e1	homalt	99.8200	99.7446	99.8955	62.4711	27725	71	27724	29	26	89.6552
jmaeng-gatk	SNP	ti	HG002complexvar	homalt	99.3419	98.7072	99.9848	18.4737	190962	2501	190952	29	26	89.6552
ghariani-varprowl	INDEL	I1_5	*	het	92.7410	98.8133	87.3718	65.8570	78102	938	78120	11291	10122	89.6466
jmaeng-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.3384	99.0709	97.6165	72.3626	5545	52	5529	135	121	89.6296
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	88.8783	96.8421	82.1248	85.9711	644	21	487	106	95	89.6226
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	93.2644	90.8623	95.7970	33.1527	18714	1882	18667	819	734	89.6215
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.2947	98.8383	97.7570	71.4388	17612	207	17215	395	354	89.6203
anovak-vg	SNP	ti	*	homalt	99.1281	98.7623	99.4967	15.3503	793100	9939	790097	3997	3582	89.6172
rpoplin-dv42	INDEL	*	HG002complexvar	*	98.9923	98.6301	99.3571	63.4999	75884	1054	75884	491	440	89.6130
jlack-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.9317	95.4084	98.5046	64.3470	5070	244	5072	77	69	89.6104
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	50.7904	39.6185	70.7374	39.8375	540	823	5132	2123	1902	89.5902
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.3548	99.1736	99.5367	47.6794	10321	86	10312	48	43	89.5833
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.8875	94.6157	99.2711	52.0847	6537	372	6537	48	43	89.5833
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	77.6408	64.0764	98.4903	40.8685	6712	3763	6263	96	86	89.5833
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.9358	97.0774	98.8095	45.2536	31057	935	41417	499	447	89.5792
ghariani-varprowl	INDEL	D6_15	HG002compoundhet	homalt	13.1465	79.1667	7.1685	47.3585	19	5	20	259	232	89.5753
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.4852	94.1121	94.8613	61.6630	3021	189	3009	163	146	89.5706
ckim-isaac	INDEL	D1_5	HG002compoundhet	het	68.7756	84.4907	57.9897	63.2088	1460	268	1125	815	730	89.5706
eyeh-varpipe	INDEL	*	map_l100_m1_e0	homalt	95.0121	96.0880	93.9601	84.1663	1179	48	1789	115	103	89.5652
asubramanian-gatk	INDEL	I16_PLUS	*	homalt	97.0923	98.3985	95.8203	73.2208	1536	25	1536	67	60	89.5522
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6842	90.2604	99.5639	40.3949	15078	1627	15298	67	60	89.5522
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6842	90.2604	99.5639	40.3949	15078	1627	15298	67	60	89.5522
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.4560	96.0456	98.9084	63.8644	6072	250	6071	67	60	89.5522
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.4560	96.0456	98.9084	63.8644	6072	250	6071	67	60	89.5522
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.3680	92.4804	96.3342	31.9134	16886	1373	16845	641	574	89.5476
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	76.9641	82.1855	72.3665	61.3081	1790	388	1477	564	505	89.5390
cchapple-custom	INDEL	D6_15	HG002complexvar	het	97.1892	96.5064	97.8818	52.6751	3011	109	3974	86	77	89.5349
astatham-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	95.6491	95.3947	95.9048	73.2348	2030	98	2014	86	77	89.5349
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.8361	99.3147	98.3621	62.3698	15652	108	15494	258	231	89.5349
jlack-gatk	INDEL	D6_15	HG002compoundhet	het	80.7008	96.6121	69.2893	65.6695	827	29	819	363	325	89.5317
mlin-fermikit	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	86.7858	90.4797	83.3817	76.0514	1226	129	1149	229	205	89.5197
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8574	99.1901	98.5270	64.5573	8328	68	8294	124	111	89.5161
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	68.9415	78.6340	61.3762	40.0333	449	122	1106	696	623	89.5115
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	93.4462	95.8525	91.1578	42.6611	1872	81	1866	181	162	89.5028

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