PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 251 252 253 254 255 256 257 258 259 ... 1720 1721 » 12701-12750 / 86044 show all
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	16.6667	100.0000	9.0909	90.8333	1	0	1	10	9	90.0000
ltrigg-rtg2	SNP	*	map_l125_m1_e0	homalt	99.7511	99.5623	99.9406	63.1402	16831	74	16832	10	9	90.0000
ltrigg-rtg2	SNP	*	map_l125_m2_e0	homalt	99.7578	99.5741	99.9422	65.9494	17301	74	17302	10	9	90.0000
ltrigg-rtg2	SNP	*	map_l125_m2_e1	homalt	99.7600	99.5779	99.9428	65.9933	17458	74	17465	10	9	90.0000
mlin-fermikit	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	58.6637	41.7103	98.8365	49.0818	1595	2229	1699	20	18	90.0000
qzeng-custom	INDEL	D1_5	map_l250_m1_e0	*	80.9673	71.3450	93.5897	97.5788	122	49	146	10	9	90.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	57.2013	57.5771	56.8303	44.8249	3978	2931	6053	4598	4136	89.9522
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	66.7149	82.5790	55.9638	44.4510	1332	281	5818	4578	4118	89.9519
ckim-isaac	INDEL	*	HG002compoundhet	*	82.5676	79.0154	86.4543	46.0363	23673	6287	22964	3598	3236	89.9389
anovak-vg	INDEL	I1_5	map_l150_m1_e0	homalt	69.0375	93.9394	54.5714	85.0810	186	12	191	159	143	89.9371
anovak-vg	SNP	ti	HG002complexvar	homalt	98.2762	97.3918	99.1768	17.9619	188418	5046	185045	1536	1381	89.9089
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.7613	94.2669	95.2609	72.9999	2006	122	1990	99	89	89.8990
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.3392	96.1587	98.5491	67.9366	5382	215	5366	79	71	89.8734
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	74.0214	58.9765	99.3707	59.0788	2086	1451	12474	79	71	89.8734
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	44.7458	92.9577	29.4643	46.0241	66	5	66	158	142	89.8734
jpowers-varprowl	INDEL	I1_5	HG002compoundhet	homalt	36.7720	93.9210	22.8614	60.8545	309	20	310	1046	940	89.8662
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9460	98.5791	99.3156	73.7970	93107	1342	93014	641	576	89.8596
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	27.8146	34.4262	23.3333	82.2835	21	40	21	69	62	89.8551
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.6403	99.3747	97.9167	72.3397	5562	35	5546	118	106	89.8305
rpoplin-dv42	SNP	ti	*	homalt	99.9800	99.9747	99.9853	16.8487	802835	203	802832	118	106	89.8305
jli-custom	INDEL	D6_15	HG002complexvar	*	98.1282	97.3972	98.8702	56.5015	5164	138	5163	59	53	89.8305
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	44.1953	30.1465	82.7653	67.2461	1728	4004	1700	354	318	89.8305
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	85.6607	94.4974	78.3354	70.0293	1288	75	1280	354	318	89.8305
gduggal-bwaplat	INDEL	D6_15	HG002complexvar	homalt	88.8329	83.9179	94.3595	65.4443	981	188	987	59	53	89.8305
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	60.0589	91.9736	44.5872	75.8345	1673	146	1701	2114	1899	89.8297
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	60.0589	91.9736	44.5872	75.8345	1673	146	1701	2114	1899	89.8297
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	60.4770	91.1661	45.2459	46.8023	258	25	414	501	450	89.8204
ckim-isaac	INDEL	D1_5	HG002compoundhet	*	88.8135	85.9501	91.8743	43.5269	10516	1719	10436	923	829	89.8158
ndellapenna-hhga	SNP	tv	HG002complexvar	homalt	99.8464	99.8065	99.8864	22.8760	94927	184	94935	108	97	89.8148
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	50.3306	47.8296	53.1077	74.2686	2391	2608	2401	2120	1904	89.8113
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	50.3306	47.8296	53.1077	74.2686	2391	2608	2401	2120	1904	89.8113
ciseli-custom	INDEL	I6_15	*	het	44.4423	31.4363	75.8046	53.6729	3154	6879	3227	1030	925	89.8058
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.2112	93.3565	99.2459	50.4272	6450	459	6449	49	44	89.7959
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	82.5967	81.0065	84.2506	51.7959	998	234	995	186	167	89.7849
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	59.8779	85.1773	46.1658	67.0074	1201	209	1192	1390	1248	89.7842
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.2297	99.8868	92.8310	67.6868	1765	2	1774	137	123	89.7810
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	77.8716	90.2041	68.5057	80.6495	442	48	298	137	123	89.7810
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	42.8527	36.9227	51.0519	66.2725	1471	2513	1456	1396	1253	89.7564
anovak-vg	INDEL	*	func_cds	homalt	87.7119	91.5929	84.1463	33.8710	207	19	207	39	35	89.7436
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.9346	99.2616	98.6098	64.3360	8334	62	8299	117	105	89.7436
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.3434	99.6186	97.1004	38.0755	1306	5	1306	39	35	89.7436
rpoplin-dv42	INDEL	I1_5	HG002complexvar	*	99.3509	99.0558	99.6477	56.5141	33048	315	33091	117	105	89.7436
eyeh-varpipe	INDEL	*	map_l125_m2_e0	homalt	96.9360	97.2477	96.6263	87.0809	742	21	1117	39	35	89.7436
eyeh-varpipe	INDEL	*	map_l125_m2_e1	homalt	96.9786	97.2868	96.6724	87.1688	753	21	1133	39	35	89.7436
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	95.2271	91.4028	99.3853	26.0145	6294	592	6306	39	35	89.7436
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.9644	96.5713	99.3983	49.3594	6450	229	6443	39	35	89.7436
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	95.5302	94.7711	96.3016	56.4893	16747	924	16743	643	577	89.7356
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	95.5302	94.7711	96.3016	56.4893	16747	924	16743	643	577	89.7356

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge