PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 246 247 248 249 250 251 252 253 254 ... 1720 1721 » 12451-12500 / 86044 show all
ltrigg-rtg2	INDEL	I6_15	HG002compoundhet	*	96.9852	94.9521	99.1073	33.0128	8333	443	8215	74	67	90.5405
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	65.9107	59.0529	74.5704	50.3413	212	147	217	74	67	90.5405
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	91.6225	98.8558	85.3755	48.1026	432	5	432	74	67	90.5405
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	80.4071	98.1366	68.1034	35.1955	158	3	158	74	67	90.5405
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8754	99.0250	98.7263	71.7769	5789	57	5736	74	67	90.5405
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8754	99.0250	98.7263	71.7769	5789	57	5736	74	67	90.5405
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	95.5779	93.7628	97.4647	70.7003	88558	5891	94531	2459	2226	90.5246
mlin-fermikit	SNP	ti	map_l250_m1_e0	homalt	53.4856	42.2526	72.8541	73.1257	679	928	679	253	229	90.5138
gduggal-bwavard	INDEL	D6_15	HG002complexvar	*	76.1590	74.2173	78.2051	56.8522	3935	1367	3782	1054	954	90.5123
ghariani-varprowl	INDEL	I6_15	HG002compoundhet	homalt	11.7284	61.2903	6.4846	55.1988	19	12	19	274	248	90.5109
ciseli-custom	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	51.2986	77.9991	38.2164	61.6156	1723	486	1727	2792	2527	90.5086
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.1122	95.6040	96.6259	60.2914	41430	1905	41238	1440	1303	90.4861
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	65.1835	87.6412	51.8876	46.8905	9077	1280	9044	8386	7588	90.4841
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	92.5926	94.7867	90.4977	51.4286	200	11	200	21	19	90.4762
ciseli-custom	INDEL	D6_15	map_siren	homalt	66.5025	82.3077	55.7895	83.1709	107	23	106	84	76	90.4762
ckim-dragen	SNP	*	map_siren	homalt	99.7220	99.5214	99.9236	48.9049	54892	264	54896	42	38	90.4762
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.0612	88.8224	97.7248	55.9006	890	112	902	21	19	90.4762
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	92.4568	90.6336	94.3548	75.3152	1974	204	1755	105	95	90.4762
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	80.5324	69.4405	95.8416	48.3640	484	213	484	21	19	90.4762
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.4735	88.5110	99.0255	55.9755	2134	277	2134	21	19	90.4762
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
jli-custom	INDEL	*	HG002complexvar	homalt	99.8318	99.8964	99.7673	56.4104	26999	28	27007	63	57	90.4762
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3946	98.1976	98.5925	80.3787	1471	27	1471	21	19	90.4762
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	95.8242	95.3125	96.3415	60.8992	549	27	553	21	19	90.4762
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3392	99.0283	99.6520	55.6062	6013	59	6013	21	19	90.4762
qzeng-custom	SNP	*	segdup	homalt	99.2653	99.1250	99.4061	87.8458	10649	94	10544	63	57	90.4762
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	88.2174	92.0732	84.6715	84.6413	151	13	116	21	19	90.4762
rpoplin-dv42	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.9893	96.9635	99.0370	71.9042	15104	473	15118	147	133	90.4762
ndellapenna-hhga	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	92.5795	92.5795	92.5795	69.2391	262	21	262	21	19	90.4762
ndellapenna-hhga	SNP	*	map_l100_m1_e0	homalt	99.7849	99.6482	99.9220	59.8338	26908	95	26908	21	19	90.4762
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	90.2936	98.1609	83.5938	71.7906	427	8	428	84	76	90.4762
ghariani-varprowl	INDEL	D6_15	map_l125_m1_e0	*	78.4141	76.0684	80.9091	92.1090	89	28	89	21	19	90.4762
ghariani-varprowl	INDEL	D6_15	map_l125_m1_e0	het	84.3537	96.8750	74.6988	93.2134	62	2	62	21	19	90.4762
ghariani-varprowl	INDEL	D6_15	map_l125_m2_e0	*	79.5082	76.9841	82.2034	92.3674	97	29	97	21	19	90.4762
ghariani-varprowl	INDEL	D6_15	map_l125_m2_e0	het	85.0000	95.7746	76.4045	93.4317	68	3	68	21	19	90.4762
gduggal-snapvard	INDEL	*	HG002complexvar	homalt	88.0378	80.0821	97.7484	41.5287	21643	5383	21880	504	456	90.4762
gduggal-bwavard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	16.6415	14.6667	19.2308	69.7674	11	64	10	42	38	90.4762
gduggal-bwavard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	31.3390	84.6154	19.2308	69.2308	11	2	10	42	38	90.4762
gduggal-bwaplat	INDEL	D6_15	*	homalt	90.8801	84.1132	98.8312	57.2595	5321	1005	5327	63	57	90.4762
gduggal-bwaplat	INDEL	I16_PLUS	*	hetalt	78.3575	65.0620	98.4827	54.0810	1365	733	1363	21	19	90.4762
gduggal-bwavard	SNP	tv	segdup	homalt	98.3926	97.4676	99.3354	90.2442	3156	82	3139	21	19	90.4762
gduggal-bwaplat	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	87.7025	78.2609	99.7349	69.6723	7902	2195	7900	21	19	90.4762
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	27.1199	15.9420	90.7489	71.4824	143	754	206	21	19	90.4762
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	87.7895	79.0971	98.6283	41.6540	1279	338	1510	21	19	90.4762
egarrison-hhga	INDEL	I1_5	HG002compoundhet	homalt	78.9281	98.4802	65.8537	81.8115	324	5	324	168	152	90.4762
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5824	99.3478	97.8288	50.3389	4722	31	4731	105	95	90.4762
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	61.6716	83.8235	48.7805	53.5849	57	11	60	63	57	90.4762
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.8600	99.6324	98.0995	67.6806	1084	4	1084	21	19	90.4762
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.1082	92.7162	93.5035	64.4487	1222	96	1209	84	76	90.4762

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge