PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 245 246 247 248 249 250 251 252 253 ... 1720 1721 » 12401-12450 / 86044 show all
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	69.8922	57.3374	89.4866	50.3641	1516	1128	366	43	39	90.6977
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	62.3549	57.1429	68.6131	99.8675	12	9	94	43	39	90.6977
dgrover-gatk	SNP	ti	*	homalt	99.9851	99.9756	99.9946	15.9219	802842	196	802833	43	39	90.6977
ciseli-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	35.9477	45.0820	29.8913	77.7240	55	67	55	129	117	90.6977
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1773	98.9437	99.4120	58.5572	7306	78	7270	43	39	90.6977
cchapple-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3332	97.2524	99.4383	69.4992	15149	428	15226	86	78	90.6977
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.3657	89.9732	92.8019	79.8114	9063	1010	8999	698	633	90.6877
astatham-gatk	INDEL	D6_15	HG002complexvar	*	98.3071	98.0385	98.5771	58.5385	5198	104	5196	75	68	90.6667
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.3318	96.1892	92.5447	77.6767	2095	83	1862	150	136	90.6667
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	19.5758	15.3515	27.0073	33.7097	107	590	111	300	272	90.6667
bgallagher-sentieon	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.1594	93.5769	94.7492	68.8883	9426	647	9275	514	466	90.6615
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.8636	96.4960	97.2340	52.6642	30871	1121	30794	876	794	90.6393
jpowers-varprowl	INDEL	D6_15	*	homalt	74.3238	61.6345	93.5925	52.0152	3899	2427	3900	267	242	90.6367
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.9102	92.5212	99.5569	59.5559	14264	1153	14381	64	58	90.6250
jlack-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.4321	87.4402	95.8060	67.3513	731	105	731	32	29	90.6250
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	94.9883	95.6391	94.3463	80.9074	1272	58	1068	64	58	90.6250
anovak-vg	INDEL	D1_5	map_l100_m2_e1	homalt	89.8740	85.8065	94.3463	82.6911	532	88	534	32	29	90.6250
asubramanian-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	91.8668	98.5050	86.0668	52.0529	593	9	593	96	87	90.6250
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.3131	96.7575	97.8752	72.7174	1492	50	1474	32	29	90.6250
rpoplin-dv42	INDEL	I16_PLUS	HG002complexvar	*	93.7832	90.4507	97.3706	62.1815	1184	125	1185	32	29	90.6250
rpoplin-dv42	SNP	*	HG002compoundhet	homalt	99.7682	99.8331	99.7035	35.1268	10764	18	10759	32	29	90.6250
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.2451	95.3502	99.2167	55.7798	8018	391	8107	64	58	90.6250
ckim-dragen	SNP	*	map_l125_m1_e0	homalt	99.5672	99.3256	99.8098	61.0436	16791	114	16796	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e0	homalt	99.5644	99.3151	99.8150	63.8939	17256	119	17261	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e1	homalt	99.5683	99.3212	99.8166	63.9224	17413	119	17418	32	29	90.6250
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	94.6645	94.1361	95.1988	74.6771	899	56	1269	64	58	90.6250
eyeh-varpipe	INDEL	I1_5	map_l100_m2_e0	homalt	97.3779	98.3051	96.4680	82.5231	522	9	874	32	29	90.6250
eyeh-varpipe	INDEL	I1_5	map_l100_m2_e1	homalt	97.3281	98.1481	96.5217	82.5526	530	10	888	32	29	90.6250
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	87.0530	88.5102	85.6431	75.6731	1610	209	1718	288	261	90.6250
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	87.0530	88.5102	85.6431	75.6731	1610	209	1718	288	261	90.6250
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	62.7001	46.0184	98.3531	38.3761	2196	2576	1911	32	29	90.6250
ckim-isaac	INDEL	D1_5	HG002complexvar	hetalt	83.2980	76.1834	91.8782	58.9369	1030	322	1448	128	116	90.6250
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	38.0404	35.5733	40.8751	72.9582	757	1371	766	1108	1004	90.6137
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.5951	96.6483	92.6274	77.7912	2105	73	1872	149	135	90.6040
raldana-dualsentieon	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6413	97.9883	99.3029	72.0487	92549	1900	92457	649	588	90.6009
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	66.2455	82.5976	55.2980	57.8918	973	205	1670	1350	1223	90.5926
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	95.6964	95.4417	95.9524	73.2314	2031	97	2015	85	77	90.5882
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	49.6103	86.3158	34.8083	73.4368	574	91	590	1105	1001	90.5882
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	94.7857	94.3579	95.2175	45.4647	11205	670	11209	563	510	90.5861
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.8985	99.2195	98.5796	63.0301	15637	123	15477	223	202	90.5830
egarrison-hhga	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	79.2993	66.3164	98.6030	66.3016	10224	5193	9740	138	125	90.5797
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.6110	96.3981	98.8550	60.6748	12070	451	11914	138	125	90.5797
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	94.2123	89.8860	98.9760	27.5881	4888	550	5123	53	48	90.5660
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.4089	97.4545	82.5903	53.4716	804	21	1760	371	336	90.5660
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.4089	97.4545	82.5903	53.4716	804	21	1760	371	336	90.5660
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.6874	96.9552	98.4307	49.3864	5668	178	14614	233	211	90.5579
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.6874	96.9552	98.4307	49.3864	5668	178	14614	233	211	90.5579
mlin-fermikit	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	87.9424	86.3802	89.5622	71.3205	3076	485	3089	360	326	90.5556
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	87.5209	83.4104	92.0575	35.5502	1443	287	1472	127	115	90.5512
ndellapenna-hhga	INDEL	I1_5	*	hetalt	97.0167	94.8280	99.3087	62.5367	10616	579	10630	74	67	90.5405

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge