PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 244 245 246 247 248 249 250 251 252 ... 1720 1721 » 12351-12400 / 86044 show all
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.0250	86.0513	98.8900	40.6231	839	136	980	11	10	90.9091
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.0334	80.6002	99.4376	31.3443	1907	459	1945	11	10	90.9091
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.1213	99.5294	98.7165	50.0292	846	4	846	11	10	90.9091
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.4903	94.0829	99.0241	51.3046	5581	351	5581	55	50	90.9091
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.3376	93.0985	97.6870	52.9536	3251	241	3252	77	70	90.9091
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.7495	97.6834	95.8333	56.5789	253	6	253	11	10	90.9091
jli-custom	INDEL	D1_5	HG002compoundhet	het	97.4993	98.1481	96.8589	75.3067	1696	32	1696	55	50	90.9091
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.5300	100.0000	93.2927	77.6871	153	0	153	11	10	90.9091
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	72.0930	70.4545	73.8095	97.7600	31	13	31	11	10	90.9091
jpowers-varprowl	INDEL	D1_5	func_cds	*	93.0818	93.0818	93.0818	35.6275	148	11	148	11	10	90.9091
jpowers-varprowl	INDEL	D1_5	func_cds	het	93.3333	98.8235	88.4211	41.7178	84	1	84	11	10	90.9091
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	85.8671	76.8612	97.2637	69.0054	382	115	391	11	10	90.9091
ltrigg-rtg1	INDEL	I6_15	*	hetalt	94.9898	90.5742	99.8580	43.9696	7745	806	7738	11	10	90.9091
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	94.3412	90.9091	98.0427	61.3214	560	56	551	11	10	90.9091
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0349	98.5054	99.5702	72.8907	63468	963	63480	274	249	90.8759
asubramanian-gatk	INDEL	I6_15	*	*	96.7639	95.5082	98.0531	53.5929	23708	1115	23721	471	428	90.8705
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.7993	95.4044	84.8163	74.1070	1038	50	1039	186	169	90.8602
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	86.9809	86.1182	87.8610	55.6334	27048	4360	27135	3749	3406	90.8509
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	86.9809	86.1182	87.8610	55.6334	27048	4360	27135	3749	3406	90.8509
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.4040	96.4646	92.4295	77.5992	2101	77	1868	153	139	90.8497
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	85.6704	84.8021	86.5567	80.2451	36749	6586	37209	5779	5249	90.8289
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.8086	98.8224	96.8153	66.1962	13595	162	13589	447	406	90.8277
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.8086	98.8224	96.8153	66.1962	13595	162	13589	447	406	90.8277
rpoplin-dv42	INDEL	D6_15	HG002complexvar	*	97.1394	96.3787	97.9123	57.5494	5110	192	5112	109	99	90.8257
gduggal-bwavard	INDEL	D6_15	HG002complexvar	het	83.6960	96.5705	73.8504	58.8480	3013	107	2923	1035	940	90.8213
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2447	97.1397	99.3753	55.6990	15588	459	15589	98	89	90.8163
dgrover-gatk	INDEL	D6_15	HG002complexvar	*	98.2978	98.0385	98.5584	58.5437	5198	104	5196	76	69	90.7895
ndellapenna-hhga	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	93.9899	93.5543	94.4295	71.2140	60278	4153	60365	3561	3233	90.7891
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	88.9263	93.1683	85.0537	75.7901	3764	276	3642	640	581	90.7813
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	47.1992	32.7962	84.1592	58.8707	1038	2127	1036	195	177	90.7692
astatham-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.9849	94.4009	95.5762	69.0899	9509	564	9355	433	393	90.7621
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.9182	95.5942	98.2795	62.6246	13973	644	13595	238	216	90.7563
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.8442	97.6336	96.0674	58.0189	3672	89	5814	238	216	90.7563
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.8442	97.6336	96.0674	58.0189	3672	89	5814	238	216	90.7563
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2755	98.9912	99.5615	74.4850	63781	650	63794	281	255	90.7473
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	95.7997	94.0020	97.6675	65.5892	5736	366	36639	875	794	90.7429
gduggal-bwaplat	INDEL	D1_5	HG002compoundhet	homalt	64.7761	74.5704	57.2559	81.8487	217	74	217	162	147	90.7407
anovak-vg	SNP	ti	map_l125_m1_e0	homalt	89.7681	81.8379	99.4000	64.4522	9039	2006	8946	54	49	90.7407
bgallagher-sentieon	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.8572	96.8783	89.1566	74.3497	931	30	888	108	98	90.7407
ciseli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	34.7826	48.7805	27.0270	82.1256	20	21	20	54	49	90.7407
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.9179	98.5780	99.2602	53.6895	7279	105	7245	54	49	90.7407
gduggal-bwavard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	65.1709	54.2531	81.5900	69.4864	8451	7126	8323	1878	1704	90.7348
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3072	99.0383	99.5775	51.0793	16271	158	35588	151	137	90.7285
gduggal-bwavard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	84.1187	95.1327	75.3903	72.1991	5805	297	5747	1876	1702	90.7249
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	88.1593	87.4776	88.8518	37.5644	21467	3073	21551	2704	2453	90.7175
ndellapenna-hhga	INDEL	I6_15	HG002compoundhet	homalt	18.3051	87.0968	10.2273	63.1285	27	4	27	237	215	90.7173
jpowers-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.6658	97.6616	97.6701	52.7872	9940	238	9935	237	215	90.7173
ndellapenna-hhga	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	94.5857	90.9615	98.5106	44.8835	2838	282	2844	43	39	90.6977
mlin-fermikit	INDEL	D1_5	map_l125_m0_e0	homalt	67.8201	66.2162	69.5035	79.0490	98	50	98	43	39	90.6977
jlack-gatk	INDEL	*	*	hetalt	94.2358	89.4005	99.6240	58.0561	22562	2675	22786	86	78	90.6977

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge