PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12001-12050 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 68.8525 | 61.7647 | 77.7778 | 97.8947 | 42 | 26 | 42 | 12 | 11 | 91.6667 | |
| jpowers-varprowl | INDEL | D6_15 | HG002compoundhet | homalt | 13.4561 | 79.1667 | 7.3529 | 47.3888 | 19 | 5 | 20 | 252 | 231 | 91.6667 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 49.7306 | 39.3443 | 67.5676 | 84.2553 | 24 | 37 | 25 | 12 | 11 | 91.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.3125 | 100.0000 | 91.0448 | 86.9776 | 122 | 0 | 122 | 12 | 11 | 91.6667 | |
| jmaeng-gatk | SNP | * | HG002compoundhet | homalt | 99.4551 | 99.0262 | 99.8877 | 35.0471 | 10677 | 105 | 10676 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 53.4023 | 37.0119 | 95.8478 | 69.3856 | 436 | 742 | 554 | 24 | 22 | 91.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002complexvar | homalt | 80.0982 | 75.0865 | 85.8268 | 71.4927 | 217 | 72 | 218 | 36 | 33 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.9444 | 80.8219 | 83.0986 | 93.6036 | 59 | 14 | 59 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | het | 86.6667 | 100.0000 | 76.4706 | 94.7639 | 39 | 0 | 39 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.2298 | 81.7073 | 84.8101 | 93.6342 | 67 | 15 | 67 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | het | 87.3786 | 97.8261 | 78.9474 | 94.7368 | 45 | 1 | 45 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 89.9023 | 87.8981 | 92.0000 | 66.5924 | 138 | 19 | 138 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.3255 | 91.3534 | 95.3846 | 81.6901 | 243 | 23 | 248 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 67.9265 | 61.4035 | 76.0000 | 99.4084 | 35 | 22 | 38 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 69.6084 | 54.3247 | 96.8586 | 71.6196 | 358 | 301 | 370 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 69.6084 | 54.3247 | 96.8586 | 71.6196 | 358 | 301 | 370 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | homalt | 60.1770 | 50.7463 | 73.9130 | 82.8358 | 34 | 33 | 34 | 12 | 11 | 91.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | het | 93.4882 | 90.9774 | 96.1415 | 59.6889 | 605 | 60 | 598 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 91.6035 | 89.2202 | 94.1176 | 80.0098 | 389 | 47 | 384 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.8698 | 84.3750 | 91.6667 | 85.3807 | 135 | 25 | 132 | 12 | 11 | 91.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002complexvar | hetalt | 96.6129 | 94.0904 | 99.2745 | 71.2548 | 1624 | 102 | 1642 | 12 | 11 | 91.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.3072 | 97.2880 | 99.3480 | 72.0840 | 3659 | 102 | 3657 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.3072 | 97.2880 | 99.3480 | 72.0840 | 3659 | 102 | 3657 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | het | 96.6823 | 95.9660 | 97.4093 | 58.8413 | 2260 | 95 | 2256 | 60 | 55 | 91.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.0284 | 92.5690 | 93.4924 | 72.3704 | 872 | 70 | 862 | 60 | 55 | 91.6667 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 95.0943 | 99.2126 | 91.3043 | 52.2491 | 126 | 1 | 126 | 12 | 11 | 91.6667 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6173 | 95.2922 | 97.9798 | 63.9563 | 587 | 29 | 582 | 12 | 11 | 91.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | homalt | 98.0952 | 100.0000 | 96.2617 | 68.7743 | 309 | 0 | 309 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 57.8606 | 40.8740 | 99.0058 | 44.7850 | 1113 | 1610 | 1195 | 12 | 11 | 91.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | homalt | 99.1884 | 99.4007 | 98.9770 | 79.1578 | 1161 | 7 | 1161 | 12 | 11 | 91.6667 | |
| qzeng-custom | SNP | ti | map_l250_m2_e0 | homalt | 73.9407 | 59.0623 | 98.8395 | 89.1089 | 1033 | 716 | 1022 | 12 | 11 | 91.6667 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 83.9237 | 76.2376 | 93.3333 | 96.6468 | 154 | 48 | 168 | 12 | 11 | 91.6667 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.0711 | 51.5528 | 77.9817 | 37.7143 | 83 | 78 | 85 | 24 | 22 | 91.6667 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7204 | 98.1014 | 99.3473 | 45.8867 | 3617 | 70 | 3653 | 24 | 22 | 91.6667 | |
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 98.0066 | 100.0000 | 96.0912 | 61.8634 | 309 | 0 | 295 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9159 | 99.9380 | 99.8938 | 56.3777 | 11289 | 7 | 11284 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.4466 | 99.9145 | 98.9831 | 63.0094 | 1168 | 1 | 1168 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7238 | 91.2679 | 98.4516 | 67.1749 | 763 | 73 | 763 | 12 | 11 | 91.6667 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1021 | 88.9925 | 97.6096 | 61.2654 | 477 | 59 | 490 | 12 | 11 | 91.6667 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.6989 | 96.2429 | 99.1997 | 49.1264 | 2869 | 112 | 2975 | 24 | 22 | 91.6667 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.5576 | 95.6170 | 99.5787 | 50.2750 | 5672 | 260 | 5672 | 24 | 22 | 91.6667 | |
| ckim-gatk | SNP | ti | map_siren | homalt | 91.8305 | 84.9219 | 99.9627 | 53.3585 | 32199 | 5717 | 32193 | 12 | 11 | 91.6667 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 78.4745 | 65.1883 | 98.5629 | 35.0700 | 779 | 416 | 823 | 12 | 11 | 91.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.4155 | 81.1111 | 94.7826 | 52.9652 | 219 | 51 | 218 | 12 | 11 | 91.6667 | |