PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1151-1200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | homalt | 98.9583 | 98.4456 | 99.4764 | 91.6630 | 190 | 3 | 190 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.2958 | 98.8318 | 99.7642 | 85.6708 | 846 | 10 | 846 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | homalt | 99.3569 | 98.9328 | 99.7847 | 86.9321 | 927 | 10 | 927 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | homalt | 99.3631 | 98.9429 | 99.7868 | 87.0245 | 936 | 10 | 936 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_siren | hetalt | 93.5065 | 88.8889 | 98.6301 | 75.8278 | 72 | 9 | 72 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | segdup | homalt | 99.6917 | 99.8765 | 99.5077 | 90.2309 | 3234 | 4 | 3234 | 16 | 16 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | homalt | 98.7342 | 100.0000 | 97.5000 | 54.5455 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.0161 | 64.7448 | 98.1308 | 54.0773 | 1763 | 960 | 105 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4130 | 95.2329 | 99.6951 | 36.9231 | 879 | 44 | 327 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 89.9387 | 93.6170 | 86.5385 | 51.8519 | 44 | 3 | 45 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | * | tech_badpromoters | homalt | 96.8718 | 96.9697 | 96.7742 | 55.7143 | 32 | 1 | 30 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.6522 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 66.6667 | 98.1250 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.9592 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 66.6667 | 95.3846 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 66.6667 | 96.9072 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 66.6667 | 98.1250 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| qzeng-custom | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 75.0000 | 97.3154 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 95.6522 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 88.0000 | 84.6154 | 91.6667 | 47.8261 | 11 | 2 | 11 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | * | hetalt | 89.9947 | 83.6798 | 97.3404 | 85.7251 | 8573 | 1672 | 183 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | hetalt | 93.1197 | 88.3876 | 98.3871 | 70.2875 | 1195 | 157 | 183 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.0385 | 86.3032 | 96.3235 | 58.6123 | 649 | 103 | 655 | 25 | 25 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0261 | 98.4496 | 99.6094 | 60.3101 | 254 | 4 | 255 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.6651 | 82.3219 | 93.7500 | 55.0802 | 312 | 67 | 315 | 21 | 21 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 39.1304 | 25.3521 | 85.7143 | 57.1429 | 18 | 53 | 18 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.5203 | 90.3553 | 94.7917 | 56.5611 | 178 | 19 | 182 | 10 | 10 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4721 | 99.4737 | 99.4705 | 36.2584 | 1323 | 7 | 1315 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 86.1563 | 76.3566 | 98.8417 | 82.7793 | 197 | 61 | 256 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 90.3416 | 83.2770 | 98.7159 | 78.5468 | 493 | 99 | 615 | 8 | 8 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 90.6644 | 83.7971 | 98.7578 | 79.4118 | 512 | 99 | 636 | 8 | 8 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e1 | homalt | 90.7434 | 84.0323 | 98.6196 | 79.5931 | 521 | 99 | 643 | 9 | 9 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | homalt | 83.6672 | 72.2973 | 99.2806 | 87.5224 | 107 | 41 | 138 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 86.1830 | 76.7908 | 98.1928 | 83.9614 | 268 | 81 | 326 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 86.4651 | 77.1978 | 98.2609 | 84.8218 | 281 | 83 | 339 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 86.7834 | 77.6882 | 98.2906 | 84.8576 | 289 | 83 | 345 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.8653 | 67.0588 | 98.7179 | 91.2752 | 57 | 28 | 77 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 84.7106 | 74.5614 | 98.0583 | 87.3775 | 170 | 58 | 202 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e0 | homalt | 85.4395 | 75.6198 | 98.1900 | 87.8035 | 183 | 59 | 217 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 85.8330 | 76.2097 | 98.2379 | 87.7562 | 189 | 59 | 223 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 83.4242 | 73.9130 | 95.7447 | 98.9135 | 34 | 12 | 45 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 85.7732 | 78.7879 | 94.1176 | 99.0950 | 26 | 7 | 32 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.8253 | 70.1754 | 98.1132 | 94.2888 | 40 | 17 | 52 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.8773 | 71.6667 | 98.2456 | 94.4714 | 43 | 17 | 56 | 1 | 1 | 100.0000 | |