PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11801-11850 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5518 | 97.8697 | 99.2436 | 49.7895 | 21776 | 474 | 21780 | 166 | 153 | 92.1687 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4016 | 97.3287 | 99.4985 | 47.5257 | 10129 | 278 | 10118 | 51 | 47 | 92.1569 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.3796 | 95.3528 | 97.4288 | 66.7644 | 3878 | 189 | 3865 | 102 | 94 | 92.1569 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 56.6114 | 42.2485 | 85.7701 | 63.4733 | 1537 | 2101 | 1537 | 255 | 235 | 92.1569 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.7737 | 66.0714 | 88.8158 | 57.1831 | 407 | 209 | 405 | 51 | 47 | 92.1569 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.4101 | 94.7437 | 98.1362 | 57.6003 | 7967 | 442 | 10057 | 191 | 176 | 92.1466 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2317 | 97.7700 | 98.6978 | 52.2722 | 35776 | 816 | 35699 | 471 | 434 | 92.1444 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 66.5297 | 57.6700 | 78.6058 | 62.8737 | 1391 | 1021 | 654 | 178 | 164 | 92.1348 | |
| gduggal-bwaplat | SNP | tv | * | homalt | 98.6202 | 97.3009 | 99.9757 | 22.0523 | 366944 | 10179 | 366871 | 89 | 82 | 92.1348 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.8667 | 97.9695 | 90.0936 | 51.1619 | 1158 | 24 | 1155 | 127 | 117 | 92.1260 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 92.2052 | 90.5600 | 93.9113 | 48.2920 | 10754 | 1121 | 12339 | 800 | 737 | 92.1250 | |
| ciseli-custom | INDEL | D6_15 | * | homalt | 66.6499 | 91.7325 | 52.3387 | 51.6724 | 5803 | 523 | 5785 | 5268 | 4853 | 92.1222 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.0468 | 95.1501 | 99.0206 | 54.5933 | 3708 | 189 | 3842 | 38 | 35 | 92.1053 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | homalt | 74.3512 | 83.5821 | 66.9565 | 84.9279 | 56 | 11 | 77 | 38 | 35 | 92.1053 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | homalt | 99.7782 | 99.8372 | 99.7192 | 55.9241 | 26983 | 44 | 26991 | 76 | 70 | 92.1053 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0605 | 98.0859 | 98.0352 | 64.9002 | 1896 | 37 | 1896 | 38 | 35 | 92.1053 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 47.6190 | 44.4444 | 51.2821 | 43.8849 | 12 | 15 | 40 | 38 | 35 | 92.1053 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8983 | 99.1544 | 98.6435 | 64.3687 | 8325 | 71 | 8290 | 114 | 105 | 92.1053 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.1465 | 92.0399 | 98.4702 | 62.7698 | 4891 | 423 | 4892 | 76 | 70 | 92.1053 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.1466 | 70.0599 | 90.9416 | 60.7394 | 702 | 300 | 763 | 76 | 70 | 92.1053 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 48.1662 | 32.3684 | 94.0862 | 61.2657 | 2706 | 5654 | 2816 | 177 | 163 | 92.0904 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 48.1662 | 32.3684 | 94.0862 | 61.2657 | 2706 | 5654 | 2816 | 177 | 163 | 92.0904 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.0763 | 92.8919 | 95.2913 | 68.9761 | 9357 | 716 | 9208 | 455 | 419 | 92.0879 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4170 | 92.5452 | 96.3660 | 61.9062 | 3687 | 297 | 3686 | 139 | 128 | 92.0863 | |
| jpowers-varprowl | INDEL | D6_15 | map_siren | * | 73.9453 | 70.3340 | 77.9476 | 83.7819 | 358 | 151 | 357 | 101 | 93 | 92.0792 | |
| cchapple-custom | INDEL | D1_5 | * | homalt | 99.7503 | 99.8385 | 99.6622 | 57.7109 | 48847 | 79 | 48389 | 164 | 151 | 92.0732 | |
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | homalt | 98.4856 | 98.5186 | 98.4525 | 57.9745 | 10441 | 157 | 10434 | 164 | 151 | 92.0732 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e1 | homalt | 67.9194 | 93.5860 | 53.3011 | 82.5513 | 321 | 22 | 331 | 290 | 267 | 92.0690 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2882 | 97.8105 | 96.7714 | 71.7102 | 5718 | 128 | 5665 | 189 | 174 | 92.0635 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2882 | 97.8105 | 96.7714 | 71.7102 | 5718 | 128 | 5665 | 189 | 174 | 92.0635 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8791 | 98.9737 | 96.8085 | 71.3456 | 5786 | 60 | 5733 | 189 | 174 | 92.0635 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8791 | 98.9737 | 96.8085 | 71.3456 | 5786 | 60 | 5733 | 189 | 174 | 92.0635 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 55.8292 | 50.1922 | 62.8926 | 42.4297 | 6919 | 6866 | 6849 | 4041 | 3720 | 92.0564 | |
| ltrigg-rtg2 | SNP | * | * | homalt | 99.9694 | 99.9515 | 99.9872 | 17.0159 | 1179585 | 572 | 1179505 | 151 | 139 | 92.0530 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.5468 | 98.7790 | 92.5194 | 46.8470 | 6634 | 82 | 6691 | 541 | 498 | 92.0518 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 69.1351 | 77.4877 | 62.4080 | 42.2541 | 2998 | 871 | 6702 | 4037 | 3716 | 92.0486 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 78.6349 | 78.0148 | 79.2648 | 83.6794 | 1682 | 474 | 1682 | 440 | 405 | 92.0455 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2064 | 95.5068 | 98.9676 | 53.3545 | 16877 | 794 | 16872 | 176 | 162 | 92.0455 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2064 | 95.5068 | 98.9676 | 53.3545 | 16877 | 794 | 16872 | 176 | 162 | 92.0455 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.5311 | 96.0668 | 99.0408 | 42.6732 | 9086 | 372 | 9086 | 88 | 81 | 92.0455 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 32.7901 | 97.1831 | 19.7222 | 22.4138 | 69 | 2 | 71 | 289 | 266 | 92.0415 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.4108 | 95.2812 | 97.5675 | 40.2387 | 23382 | 1158 | 24186 | 603 | 555 | 92.0398 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 63.0990 | 53.8182 | 76.2478 | 70.5076 | 444 | 381 | 443 | 138 | 127 | 92.0290 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 63.0990 | 53.8182 | 76.2478 | 70.5076 | 444 | 381 | 443 | 138 | 127 | 92.0290 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 79.7819 | 78.2631 | 81.3608 | 56.9182 | 3118 | 866 | 3121 | 715 | 658 | 92.0280 | |
| anovak-vg | INDEL | * | map_l125_m1_e0 | homalt | 76.2677 | 86.4754 | 68.2154 | 83.1764 | 633 | 99 | 646 | 301 | 277 | 92.0266 | |
| hfeng-pmm2 | INDEL | I6_15 | * | * | 97.8481 | 96.8980 | 98.8171 | 51.0141 | 24053 | 770 | 24058 | 288 | 265 | 92.0139 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.7484 | 92.8627 | 96.7122 | 44.0182 | 19126 | 1470 | 19885 | 676 | 622 | 92.0118 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | * | 77.5010 | 72.3485 | 83.4437 | 83.8330 | 191 | 73 | 252 | 50 | 46 | 92.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.7644 | 99.0244 | 89.0351 | 90.6863 | 203 | 2 | 203 | 25 | 23 | 92.0000 | |