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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11701-11750 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 67.0250 | 86.3068 | 54.7854 | 60.5199 | 3246 | 515 | 4110 | 3392 | 3132 | 92.3349 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 67.0250 | 86.3068 | 54.7854 | 60.5199 | 3246 | 515 | 4110 | 3392 | 3132 | 92.3349 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.6051 | 97.9373 | 87.8236 | 56.1886 | 11063 | 233 | 11468 | 1590 | 1468 | 92.3270 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 44.0640 | 31.3725 | 74.0000 | 55.3571 | 32 | 70 | 37 | 13 | 12 | 92.3077 | |
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | homalt | 87.4215 | 80.5158 | 95.6229 | 85.7759 | 281 | 68 | 284 | 13 | 12 | 92.3077 | |
| anovak-vg | SNP | * | segdup | homalt | 98.7938 | 98.6875 | 98.9004 | 87.8317 | 10602 | 141 | 10523 | 117 | 108 | 92.3077 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4891 | 99.5708 | 99.4077 | 75.9619 | 21805 | 94 | 21817 | 130 | 120 | 92.3077 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.0004 | 93.1933 | 98.9817 | 26.3036 | 7544 | 551 | 7582 | 78 | 72 | 92.3077 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.0055 | 90.4209 | 93.6466 | 50.9768 | 2492 | 264 | 2491 | 169 | 156 | 92.3077 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 74.7337 | 62.6214 | 92.6554 | 54.8469 | 129 | 77 | 164 | 13 | 12 | 92.3077 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.6115 | 86.6324 | 99.4771 | 37.4276 | 2359 | 364 | 2473 | 13 | 12 | 92.3077 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.3320 | 93.5417 | 97.1922 | 82.4555 | 449 | 31 | 450 | 13 | 12 | 92.3077 | |
| astatham-gatk | SNP | * | HG002compoundhet | homalt | 99.8748 | 99.8702 | 99.8794 | 34.8528 | 10768 | 14 | 10763 | 13 | 12 | 92.3077 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.3274 | 94.4904 | 86.5158 | 75.9742 | 2058 | 120 | 1835 | 286 | 264 | 92.3077 | |
| jlack-gatk | INDEL | I1_5 | * | hetalt | 94.8892 | 90.3796 | 99.8725 | 62.8887 | 10118 | 1077 | 10180 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 27.9590 | 17.7515 | 65.7895 | 60.0000 | 30 | 139 | 25 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | * | 58.1706 | 46.3918 | 77.9661 | 85.9857 | 45 | 52 | 46 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 94.5833 | 99.7919 | 0 | 1 | 227 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | * | 76.5753 | 70.9091 | 83.2258 | 83.8877 | 195 | 80 | 258 | 52 | 48 | 92.3077 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 49.6674 | 33.2688 | 97.9463 | 41.1847 | 1546 | 3101 | 2480 | 52 | 48 | 92.3077 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | * | 76.4706 | 68.4211 | 86.6667 | 74.6424 | 78 | 36 | 169 | 26 | 24 | 92.3077 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | * | 76.3242 | 68.1034 | 86.8020 | 75.9463 | 79 | 37 | 171 | 26 | 24 | 92.3077 | |
| gduggal-bwavard | SNP | ti | HG002compoundhet | homalt | 90.8566 | 83.4190 | 99.7503 | 32.3766 | 6168 | 1226 | 5194 | 13 | 12 | 92.3077 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 58.9266 | 44.3902 | 87.6190 | 88.5120 | 91 | 114 | 92 | 13 | 12 | 92.3077 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 58.9266 | 44.3902 | 87.6190 | 88.5120 | 91 | 114 | 92 | 13 | 12 | 92.3077 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.5847 | 95.9538 | 99.2721 | 31.4921 | 1660 | 70 | 1773 | 13 | 12 | 92.3077 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 61.3636 | 79.4118 | 50.0000 | 87.9908 | 27 | 7 | 26 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | homalt | 61.5635 | 77.7778 | 50.9434 | 88.8889 | 28 | 8 | 27 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 62.4135 | 78.3784 | 51.8519 | 88.9117 | 29 | 8 | 28 | 26 | 24 | 92.3077 | |
| ckim-dragen | SNP | ti | map_l125_m0_e0 | homalt | 99.4419 | 99.1761 | 99.7092 | 62.9046 | 4454 | 37 | 4457 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.9248 | 100.0000 | 92.1687 | 77.1034 | 153 | 0 | 153 | 13 | 12 | 92.3077 | |
| ckim-dragen | INDEL | * | segdup | homalt | 99.2754 | 99.8958 | 98.6626 | 93.6124 | 959 | 1 | 959 | 13 | 12 | 92.3077 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 93.5361 | 96.8504 | 90.4412 | 37.6147 | 123 | 4 | 123 | 13 | 12 | 92.3077 | |
| cchapple-custom | INDEL | D1_5 | HG002complexvar | homalt | 99.5858 | 99.5565 | 99.6150 | 53.3069 | 10551 | 47 | 10092 | 39 | 36 | 92.3077 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9093 | 94.7026 | 99.2213 | 43.0691 | 6543 | 366 | 6626 | 52 | 48 | 92.3077 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.7735 | 92.5000 | 97.1616 | 81.7457 | 444 | 36 | 445 | 13 | 12 | 92.3077 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.8552 | 97.7169 | 97.9938 | 73.0000 | 642 | 15 | 635 | 13 | 12 | 92.3077 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | homalt | 70.9278 | 69.3548 | 72.5738 | 81.4699 | 172 | 76 | 172 | 65 | 60 | 92.3077 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.9858 | 93.9024 | 59.6899 | 69.3587 | 77 | 5 | 77 | 52 | 48 | 92.3077 | |
| mlin-fermikit | SNP | * | func_cds | homalt | 99.5356 | 99.8137 | 99.2590 | 20.0683 | 6966 | 13 | 6966 | 52 | 48 | 92.3077 | |
| qzeng-custom | SNP | ti | map_l250_m2_e1 | homalt | 74.0705 | 59.2551 | 98.7643 | 89.0815 | 1050 | 722 | 1039 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | SNP | ti | map_l100_m1_e0 | homalt | 99.8161 | 99.7049 | 99.9275 | 56.2318 | 17907 | 53 | 17907 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | homalt | 99.8196 | 99.7105 | 99.9288 | 58.8267 | 18256 | 53 | 18256 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | homalt | 99.8214 | 99.7134 | 99.9296 | 58.8080 | 18441 | 53 | 18441 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.1070 | 95.3734 | 98.9048 | 56.9460 | 1175 | 57 | 1174 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | het | 95.7688 | 92.6603 | 99.0931 | 57.6076 | 2891 | 229 | 2841 | 26 | 24 | 92.3077 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | * | 97.8362 | 96.7150 | 98.9836 | 65.6644 | 1266 | 43 | 1266 | 13 | 12 | 92.3077 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | homalt | 98.9435 | 98.3702 | 99.5236 | 74.2304 | 2716 | 45 | 2716 | 13 | 12 | 92.3077 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.2050 | 96.4561 | 97.9656 | 65.7923 | 626 | 23 | 626 | 13 | 12 | 92.3077 | |