PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11251-11300 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.8935 | 85.7610 | 94.4444 | 82.5788 | 524 | 87 | 527 | 31 | 29 | 93.5484 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002compoundhet | homalt | 15.7895 | 75.0000 | 8.8235 | 49.2537 | 6 | 2 | 6 | 62 | 58 | 93.5484 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.8814 | 39.9386 | 78.2347 | 54.0553 | 780 | 1173 | 780 | 217 | 203 | 93.5484 | |
| hfeng-pmm1 | INDEL | I6_15 | HG002compoundhet | het | 80.0927 | 79.8077 | 80.3797 | 86.5646 | 166 | 42 | 127 | 31 | 29 | 93.5484 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4932 | 99.8351 | 99.1537 | 57.8723 | 3632 | 6 | 3632 | 31 | 29 | 93.5484 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0631 | 96.8992 | 99.2554 | 50.7827 | 31000 | 992 | 30924 | 232 | 217 | 93.5345 | |
| ciseli-custom | INDEL | I6_15 | HG002compoundhet | het | 17.3297 | 18.2692 | 16.4820 | 51.6410 | 38 | 170 | 119 | 603 | 564 | 93.5323 | |
| gduggal-bwafb | INDEL | D6_15 | * | * | 94.1659 | 91.7408 | 96.7228 | 49.8237 | 23937 | 2155 | 25057 | 849 | 794 | 93.5218 | |
| gduggal-bwavard | INDEL | I6_15 | HG002complexvar | het | 78.6071 | 93.9278 | 67.5834 | 56.2348 | 2212 | 143 | 2187 | 1049 | 981 | 93.5176 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.5341 | 99.1135 | 96.0043 | 33.9044 | 559 | 5 | 4445 | 185 | 173 | 93.5135 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 68.0107 | 68.2833 | 67.7403 | 40.7190 | 3914 | 1818 | 10936 | 5208 | 4870 | 93.5100 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002compoundhet | het | 5.1421 | 59.5745 | 2.6870 | 48.2525 | 28 | 19 | 37 | 1340 | 1253 | 93.5075 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2722 | 96.5106 | 96.0350 | 77.8916 | 2102 | 76 | 1865 | 77 | 72 | 93.5065 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8906 | 98.8643 | 98.9168 | 67.1655 | 14451 | 166 | 14063 | 154 | 144 | 93.5065 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | het | 96.1554 | 93.2692 | 99.2258 | 33.4003 | 194 | 14 | 9869 | 77 | 72 | 93.5065 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 46.3721 | 79.4421 | 32.7422 | 66.7816 | 769 | 199 | 757 | 1555 | 1454 | 93.5048 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | homalt | 76.5861 | 87.2046 | 68.2728 | 79.5887 | 1070 | 157 | 1091 | 507 | 474 | 93.4911 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.3589 | 71.6332 | 73.0994 | 78.0347 | 250 | 99 | 250 | 92 | 86 | 93.4783 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | homalt | 73.1572 | 72.2527 | 74.0845 | 79.6211 | 263 | 101 | 263 | 92 | 86 | 93.4783 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 84.7458 | 91.1458 | 79.1855 | 59.0741 | 175 | 17 | 175 | 46 | 43 | 93.4783 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | homalt | 99.7542 | 99.8483 | 99.6603 | 56.1296 | 26986 | 41 | 26994 | 92 | 86 | 93.4783 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 75.4653 | 90.5356 | 64.6962 | 41.2162 | 1234 | 129 | 9456 | 5160 | 4823 | 93.4690 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.4647 | 97.8852 | 89.4261 | 56.5157 | 1620 | 35 | 1683 | 199 | 186 | 93.4673 | |
| asubramanian-gatk | INDEL | D6_15 | HG002compoundhet | homalt | 23.8806 | 100.0000 | 13.5593 | 67.6417 | 24 | 0 | 24 | 153 | 143 | 93.4641 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.1022 | 99.6257 | 98.5842 | 64.7104 | 18098 | 68 | 18104 | 260 | 243 | 93.4615 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1022 | 99.6257 | 98.5842 | 64.7104 | 18098 | 68 | 18104 | 260 | 243 | 93.4615 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 31.9171 | 30.3578 | 33.6453 | 67.1740 | 806 | 1849 | 791 | 1560 | 1458 | 93.4615 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 52.4859 | 43.1507 | 66.9753 | 66.7692 | 378 | 498 | 434 | 214 | 200 | 93.4579 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.3227 | 27.8708 | 61.3176 | 55.5889 | 233 | 603 | 363 | 229 | 214 | 93.4498 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002compoundhet | homalt | 16.0000 | 75.0000 | 8.9552 | 50.7353 | 6 | 2 | 6 | 61 | 57 | 93.4426 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.2962 | 90.1200 | 96.7045 | 61.7457 | 5482 | 601 | 5370 | 183 | 171 | 93.4426 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.4151 | 97.5003 | 99.3472 | 47.2567 | 9283 | 238 | 9283 | 61 | 57 | 93.4426 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7613 | 96.7656 | 96.7570 | 71.4697 | 1825 | 61 | 1820 | 61 | 57 | 93.4426 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.3444 | 86.0491 | 88.6792 | 69.8967 | 1542 | 250 | 1551 | 198 | 185 | 93.4343 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 52.1029 | 79.6221 | 38.7203 | 60.5927 | 590 | 151 | 587 | 929 | 868 | 93.4338 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 90.8783 | 90.7300 | 91.0272 | 61.1646 | 783 | 80 | 771 | 76 | 71 | 93.4211 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 92.9690 | 88.5553 | 97.8458 | 55.3644 | 3451 | 446 | 3452 | 76 | 71 | 93.4211 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 45.2624 | 94.5183 | 29.7558 | 27.9326 | 569 | 33 | 585 | 1381 | 1290 | 93.4106 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 87.5740 | 97.1061 | 79.7460 | 45.0808 | 302 | 9 | 1193 | 303 | 283 | 93.3993 | |
| gduggal-bwavard | INDEL | I6_15 | HG002complexvar | * | 69.2732 | 64.9624 | 74.1967 | 53.0461 | 3113 | 1679 | 3048 | 1060 | 990 | 93.3962 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.5694 | 95.6738 | 68.1055 | 61.1370 | 1349 | 61 | 1420 | 665 | 621 | 93.3835 | |
| ndellapenna-hhga | INDEL | D1_5 | * | het | 97.6637 | 99.1299 | 96.2402 | 54.0039 | 86812 | 762 | 87337 | 3412 | 3186 | 93.3763 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.5076 | 98.0387 | 98.9810 | 60.6867 | 30792 | 616 | 30792 | 317 | 296 | 93.3754 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.5076 | 98.0387 | 98.9810 | 60.6867 | 30792 | 616 | 30792 | 317 | 296 | 93.3754 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | het | 32.8633 | 69.2308 | 21.5453 | 64.8197 | 144 | 64 | 145 | 528 | 493 | 93.3712 | |
| ndellapenna-hhga | INDEL | * | HG002compoundhet | * | 77.5493 | 76.6121 | 78.5097 | 71.2626 | 22953 | 7007 | 23717 | 6492 | 6061 | 93.3611 | |
| anovak-vg | INDEL | I1_5 | HG002complexvar | * | 58.0984 | 57.1891 | 59.0370 | 52.0780 | 19080 | 14283 | 19360 | 13433 | 12541 | 93.3596 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 17.6716 | 10.8017 | 48.5470 | 60.1499 | 322 | 2659 | 284 | 301 | 281 | 93.3555 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 85.1837 | 88.4652 | 82.1369 | 53.6130 | 7401 | 965 | 7403 | 1610 | 1503 | 93.3540 | |
| ghariani-varprowl | INDEL | D6_15 | HG002complexvar | * | 76.3894 | 73.9155 | 79.0345 | 58.8274 | 3919 | 1383 | 3913 | 1038 | 969 | 93.3526 | |