PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1051-1100 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.4958 | 98.9669 | 98.0290 | 61.4708 | 958 | 10 | 945 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 80.7772 | 68.1698 | 99.1060 | 43.0545 | 771 | 360 | 776 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 50.0731 | 34.1014 | 94.1860 | 56.1224 | 74 | 143 | 81 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.9410 | 77.6358 | 98.7805 | 31.0924 | 243 | 70 | 243 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.9707 | 98.1273 | 93.9068 | 59.2105 | 262 | 5 | 262 | 17 | 17 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 25.0000 | 50.0000 | 16.6667 | 76.9231 | 1 | 1 | 1 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 45.1613 | 30.4348 | 87.5000 | 27.2727 | 7 | 16 | 7 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | homalt | 57.1429 | 44.4444 | 80.0000 | 95.0495 | 4 | 5 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | homalt | 53.1250 | 38.6364 | 85.0000 | 92.5094 | 17 | 27 | 17 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | homalt | 54.5455 | 40.0000 | 85.7143 | 93.6937 | 18 | 27 | 18 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | homalt | 55.8824 | 41.3043 | 86.3636 | 93.6599 | 19 | 27 | 19 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | segdup | homalt | 97.9723 | 97.0402 | 98.9224 | 91.0078 | 459 | 14 | 459 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | * | hetalt | 71.1528 | 55.4789 | 99.1705 | 39.8078 | 4744 | 3807 | 4782 | 40 | 40 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | HG002complexvar | hetalt | 80.4538 | 68.1930 | 98.0899 | 54.1945 | 834 | 389 | 873 | 17 | 17 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | hetalt | 71.1432 | 55.4293 | 99.2920 | 28.6902 | 4732 | 3805 | 4768 | 34 | 34 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | func_cds | * | 96.4706 | 95.3488 | 97.6190 | 37.3134 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | func_cds | het | 97.9592 | 100.0000 | 96.0000 | 37.5000 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 48.6822 | 32.4528 | 97.3822 | 61.4141 | 172 | 358 | 186 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.8824 | 93.2203 | 71.4286 | 78.0627 | 55 | 4 | 55 | 22 | 22 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 77.3064 | 63.5256 | 98.7224 | 46.6579 | 1982 | 1138 | 2009 | 26 | 26 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 72.9780 | 57.9977 | 98.3917 | 46.7104 | 2045 | 1481 | 2080 | 34 | 34 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 82.4534 | 76.4045 | 89.5425 | 70.1754 | 136 | 42 | 137 | 16 | 16 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.5634 | 83.9506 | 85.1852 | 72.6351 | 68 | 13 | 69 | 12 | 12 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 72.1649 | 57.3770 | 97.2222 | 62.8866 | 35 | 26 | 35 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.6667 | 91.6667 | 91.6667 | 70.0000 | 33 | 3 | 33 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 89.5255 | 86.7232 | 92.5150 | 65.8836 | 307 | 47 | 309 | 25 | 25 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.2206 | 93.2203 | 89.3048 | 64.9813 | 165 | 12 | 167 | 20 | 20 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 79.7299 | 67.0588 | 98.3051 | 62.1795 | 57 | 28 | 58 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.8979 | 92.3913 | 95.4545 | 69.5502 | 85 | 7 | 84 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.2698 | 88.4298 | 94.2982 | 65.0842 | 214 | 28 | 215 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.2079 | 95.0820 | 91.4062 | 63.0058 | 116 | 6 | 117 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.4998 | 94.1176 | 96.9231 | 69.9074 | 64 | 4 | 63 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 44.6151 | 28.9256 | 97.5000 | 59.5960 | 105 | 258 | 117 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 75.4098 | 95.8333 | 62.1622 | 79.5580 | 23 | 1 | 23 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 79.6660 | 86.7925 | 73.6211 | 64.8101 | 644 | 98 | 614 | 220 | 220 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 72.4268 | 57.1879 | 98.7375 | 38.9205 | 1452 | 1087 | 1486 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 82.3039 | 88.8889 | 76.6272 | 63.8696 | 536 | 67 | 518 | 158 | 158 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 76.0030 | 61.7352 | 98.8481 | 36.6332 | 1352 | 838 | 1373 | 16 | 16 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 72.5735 | 57.3752 | 98.7253 | 40.9262 | 1517 | 1127 | 1549 | 20 | 20 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 72.9780 | 57.9977 | 98.3917 | 46.7104 | 2045 | 1481 | 2080 | 34 | 34 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.2779 | 63.3540 | 99.0460 | 46.3471 | 1122 | 649 | 1142 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.8288 | 17.3913 | 84.2105 | 81.9048 | 16 | 76 | 16 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 55.5556 | 0.0000 | 95.4545 | 5 | 4 | 0 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 23.2343 | 13.2530 | 94.1176 | 59.5238 | 11 | 72 | 16 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.3343 | 83.8710 | 91.0959 | 81.8408 | 130 | 25 | 133 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.0777 | 90.3226 | 84.0580 | 83.3333 | 56 | 6 | 58 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.9592 | 95.9184 | 96.0000 | 82.4561 | 47 | 2 | 48 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 77.1048 | 63.8066 | 97.4057 | 47.3945 | 409 | 232 | 413 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.2217 | 93.0556 | 91.4027 | 66.4134 | 201 | 15 | 202 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 46.2359 | 35.4839 | 66.3366 | 79.0456 | 66 | 120 | 67 | 34 | 34 | 100.0000 | |