PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10551-10600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5546 | 98.8657 | 96.2777 | 63.5724 | 2702 | 31 | 2690 | 104 | 99 | 95.1923 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 60.3325 | 43.6538 | 97.6360 | 47.3850 | 3006 | 3880 | 3428 | 83 | 79 | 95.1807 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 55.8931 | 39.9329 | 93.1051 | 68.6867 | 1071 | 1611 | 1958 | 145 | 138 | 95.1724 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.5056 | 97.7103 | 93.3982 | 67.8398 | 17411 | 408 | 17274 | 1221 | 1162 | 95.1679 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | homalt | 78.9341 | 78.8851 | 78.9831 | 76.7350 | 467 | 125 | 466 | 124 | 118 | 95.1613 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | homalt | 79.5902 | 79.5417 | 79.6388 | 77.9587 | 486 | 125 | 485 | 124 | 118 | 95.1613 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0142 | 94.4383 | 97.6435 | 60.1906 | 2581 | 152 | 2569 | 62 | 59 | 95.1613 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8010 | 94.0359 | 97.6336 | 60.3151 | 2570 | 163 | 2558 | 62 | 59 | 95.1613 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.1094 | 95.4346 | 98.8440 | 49.6543 | 14110 | 675 | 14108 | 165 | 157 | 95.1515 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.6332 | 88.2406 | 95.2970 | 51.5896 | 15593 | 2078 | 16717 | 825 | 785 | 95.1515 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.6332 | 88.2406 | 95.2970 | 51.5896 | 15593 | 2078 | 16717 | 825 | 785 | 95.1515 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.1773 | 86.7440 | 96.0881 | 48.8639 | 2840 | 434 | 2530 | 103 | 98 | 95.1456 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.0250 | 87.1204 | 88.9485 | 79.8268 | 832 | 123 | 829 | 103 | 98 | 95.1456 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.3317 | 97.1116 | 95.5642 | 35.5358 | 2219 | 66 | 2219 | 103 | 98 | 95.1456 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 79.5775 | 77.4363 | 81.8404 | 75.0483 | 49893 | 14538 | 49840 | 11059 | 10522 | 95.1442 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7577 | 99.3291 | 98.1927 | 66.2045 | 12437 | 84 | 12279 | 226 | 215 | 95.1327 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7184 | 99.3562 | 96.1338 | 51.2081 | 6636 | 43 | 6639 | 267 | 254 | 95.1311 | |
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | homalt | 63.6297 | 55.5184 | 74.5166 | 48.8430 | 4316 | 3458 | 4316 | 1476 | 1404 | 95.1220 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3211 | 96.1768 | 98.4930 | 60.0607 | 8075 | 321 | 8039 | 123 | 117 | 95.1220 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5343 | 99.4751 | 99.5935 | 60.5291 | 10044 | 53 | 10045 | 41 | 39 | 95.1220 | |
| eyeh-varpipe | INDEL | I1_5 | HG002complexvar | hetalt | 71.6240 | 56.8366 | 96.8118 | 75.7679 | 981 | 745 | 1245 | 41 | 39 | 95.1220 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002compoundhet | hetalt | 84.6945 | 73.7471 | 99.4587 | 70.0372 | 7534 | 2682 | 7533 | 41 | 39 | 95.1220 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9618 | 96.7154 | 99.2407 | 47.8941 | 10718 | 364 | 10718 | 82 | 78 | 95.1220 | |
| dgrover-gatk | INDEL | D6_15 | * | hetalt | 97.1534 | 94.9352 | 99.4777 | 33.7944 | 7760 | 414 | 7809 | 41 | 39 | 95.1220 | |
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | hetalt | 95.5961 | 100.0000 | 91.5638 | 80.0247 | 1 | 0 | 445 | 41 | 39 | 95.1220 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | het | 95.6155 | 96.8360 | 94.4254 | 57.0236 | 20108 | 657 | 20072 | 1185 | 1127 | 95.1055 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 46.7905 | 38.6828 | 59.1981 | 64.3248 | 511 | 810 | 502 | 346 | 329 | 95.0867 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 54.5918 | 37.8497 | 97.8929 | 39.6624 | 2584 | 4243 | 2834 | 61 | 58 | 95.0820 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 67.2635 | 54.0570 | 89.0090 | 75.3662 | 493 | 419 | 494 | 61 | 58 | 95.0820 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.2627 | 95.4437 | 97.0959 | 63.8638 | 13951 | 666 | 13574 | 406 | 386 | 95.0739 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 67.2522 | 88.7931 | 54.1223 | 65.4094 | 412 | 52 | 407 | 345 | 328 | 95.0725 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6906 | 99.4825 | 97.9112 | 60.8903 | 18072 | 94 | 18047 | 385 | 366 | 95.0649 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6906 | 99.4825 | 97.9112 | 60.8903 | 18072 | 94 | 18047 | 385 | 366 | 95.0649 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 88.1349 | 97.1942 | 80.6205 | 57.4187 | 13371 | 386 | 13903 | 3342 | 3177 | 95.0628 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 88.1349 | 97.1942 | 80.6205 | 57.4187 | 13371 | 386 | 13903 | 3342 | 3177 | 95.0628 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.9629 | 98.6871 | 93.3851 | 38.4673 | 2255 | 30 | 2287 | 162 | 154 | 95.0617 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 33.7995 | 27.2556 | 44.4783 | 55.2641 | 580 | 1548 | 584 | 729 | 693 | 95.0617 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5920 | 97.2554 | 97.9309 | 57.6692 | 17186 | 485 | 17181 | 363 | 345 | 95.0413 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5920 | 97.2554 | 97.9309 | 57.6692 | 17186 | 485 | 17181 | 363 | 345 | 95.0413 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.5632 | 66.2900 | 68.8862 | 64.2887 | 1760 | 895 | 1738 | 785 | 746 | 95.0318 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.0660 | 95.3263 | 98.8704 | 48.8773 | 14094 | 691 | 14092 | 161 | 153 | 95.0311 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.2804 | 95.7563 | 96.8102 | 77.5473 | 41496 | 1839 | 41428 | 1365 | 1297 | 95.0183 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0475 | 97.3843 | 98.7198 | 54.0333 | 21668 | 582 | 21669 | 281 | 267 | 95.0178 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 56.3122 | 94.1558 | 40.1678 | 59.0614 | 435 | 27 | 431 | 642 | 610 | 95.0156 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 42.2458 | 32.6120 | 59.9579 | 69.4254 | 1733 | 3581 | 1710 | 1142 | 1085 | 95.0088 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 68.8039 | 91.6288 | 55.0827 | 70.2532 | 1412 | 129 | 1398 | 1140 | 1083 | 95.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 90.6416 | 91.6129 | 89.6907 | 78.8210 | 142 | 13 | 174 | 20 | 19 | 95.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.1378 | 44.2087 | 94.0120 | 60.5667 | 500 | 631 | 942 | 60 | 57 | 95.0000 | |