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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10151-10200 / 86044 show all
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.0769
99.5816
96.6171
61.4099
71437142524
96.0000
ciseli-customINDELD6_15segduphomalt
75.0000
90.0000
64.2857
93.2757
455452524
96.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7781
99.9671
99.5898
57.9481
6070260702524
96.0000
ckim-gatkINDELI1_5HG002complexvarhomalt
99.8588
99.9033
99.8143
52.9260
1343513134412524
96.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
89.8396
97.2973
83.4437
59.6257
25272525048
96.0000
cchapple-customINDELD1_5HG002compoundhethet
97.4821
96.0069
99.0033
65.2258
16596912417125120
96.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
69.4864
63.7097
76.4151
99.9162
7945812524
96.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
91.1134
93.7764
88.5975
54.4652
15521031554200192
96.0000
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
94.0704
96.0794
92.1437
38.7632
803832810849925888
96.0000
ghariani-varprowlINDELI16_PLUSmap_siren*
59.4937
54.6512
65.2778
81.5385
4739472524
96.0000
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.3687
31.5895
80.4688
67.2634
1573401032524
96.0000
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
68.0749
52.0749
98.2675
53.6013
1418130514182524
96.0000
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
93.9702
92.4431
95.5486
30.3243
126010311269525504
96.0000
eyeh-varpipeINDEL***
92.5779
91.3854
93.8021
63.3717
314861296813171112095320114
95.9958
mlin-fermikitINDELD1_5**
96.7247
95.7954
97.6723
56.1904
140575617014039933463212
95.9952
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
35.3846
71.4286
23.5174
34.4504
11546115374359
95.9893
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6838
97.4223
97.9467
56.1751
3692597736731770739
95.9740
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
49.3293
79.5367
35.7513
30.4087
20653207372357
95.9677
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
29.3005
21.5292
45.8515
79.6625
107390105124119
95.9677
mlin-fermikitINDELD6_15HG002complexvarhomalt
89.0670
95.2951
83.6029
66.2028
1114551137223214
95.9641
eyeh-varpipeINDELD1_5HG002compoundhethetalt
58.5449
41.7091
98.1717
64.4031
4261595553169995
95.9596
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
62.8725
52.4099
78.5542
50.1920
10339381630445427
95.9551
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
62.8725
52.4099
78.5542
50.1920
10339381630445427
95.9551
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
84.8454
79.2480
91.2936
44.8269
16654362590247237
95.9514
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
75.4208
86.9067
66.6165
52.9703
53180443222213
95.9459
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
50.6627
34.2063
97.6335
41.8233
2769532630537471
95.9459
jli-customINDEL*HG002compoundhet*
95.6209
94.1822
97.1042
61.3856
28217174328100838804
95.9427
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
29.6749
20.1610
56.1914
69.4731
6012380599467448
95.9315
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
73.1919
91.6667
60.9150
62.8898
12211111225786754
95.9288
rpoplin-dv42INDELD6_15*het
97.5270
99.0079
96.0896
61.5469
1147711511451466447
95.9227
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
93.8149
89.8021
98.2032
50.1554
267730426784947
95.9184
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
87.7292
95.8398
80.8843
58.8109
62227622147141
95.9184
ckim-dragenINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
82.6667
97.6378
71.6763
51.1299
12431244947
95.9184
eyeh-varpipeSNPti*hetalt
99.5363
99.8282
99.2460
38.4448
581164504947
95.9184
gduggal-bwavardSNP*segduphomalt
98.6646
97.8125
99.5315
88.9251
10508235104114947
95.9184
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
90.1750
93.3148
87.2396
48.1081
335243354947
95.9184
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
81.8508
71.2279
96.1979
32.2123
23329426806269258
95.9108
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
89.5152
98.0903
82.3188
67.4835
56511568122117
95.9016
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
85.7951
83.9912
87.6782
74.5242
30435803814536514
95.8955
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.6077
98.1214
99.0988
41.2220
2407946124081219210
95.8904
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
23.8908
17.7515
36.5217
59.5070
30139427370
95.8904
mlin-fermikitINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
73.6558
85.1238
64.9109
67.0798
3439601324117521680
95.8904
asubramanian-gatkINDELI1_5HG002compoundhet*
95.2373
93.5902
96.9436
67.0365
1156479211577365350
95.8904
asubramanian-gatkINDELI1_5HG002compoundhethet
93.5851
96.0000
91.2888
86.8239
816347657370
95.8904
ghariani-varprowlINDELD16_PLUS**
61.7015
59.1244
64.5135
70.3568
40112773402522142123
95.8898
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
40.7567
52.0900
33.4737
59.2973
162149159316303
95.8861
ciseli-customINDELD16_PLUSHG002compoundhethet
17.8807
11.8519
36.3934
44.8463
48357111194186
95.8763
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.0152
97.3690
98.6701
49.3437
1439638914394194186
95.8763
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
80.6824
72.6236
90.7531
35.9976
9553609529793
95.8763
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.8065
98.5086
99.1063
41.3831
2417436624176218209
95.8716