PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
951-1000 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.0100 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 96.6667 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.3789 | 96.2567 | 94.5170 | 61.8146 | 360 | 14 | 362 | 21 | 21 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.5006 | 96.2099 | 96.7930 | 60.2549 | 330 | 13 | 332 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 57.5970 | 40.5152 | 99.5822 | 36.4039 | 692 | 1016 | 715 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.2748 | 93.5927 | 70.2749 | 53.8827 | 409 | 28 | 409 | 173 | 173 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 77.7879 | 63.7655 | 99.7160 | 28.7405 | 4535 | 2577 | 4564 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 82.8388 | 70.8349 | 99.7415 | 27.5927 | 3852 | 1586 | 3858 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 77.6790 | 63.6186 | 99.7178 | 29.4964 | 4564 | 2610 | 4593 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 83.5892 | 71.9405 | 99.7391 | 27.4753 | 3433 | 1339 | 3441 | 9 | 9 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 47.8252 | 42.6757 | 54.3879 | 44.5978 | 504 | 677 | 502 | 421 | 421 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 31.8686 | 65.5405 | 21.0526 | 51.2162 | 97 | 51 | 76 | 285 | 285 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 44.9406 | 29.0138 | 99.6337 | 37.6712 | 253 | 619 | 272 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 68.4444 | 95.6522 | 53.2872 | 40.7787 | 154 | 7 | 154 | 135 | 135 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.4359 | 100.0000 | 95.0000 | 83.9034 | 74 | 0 | 76 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 44.4444 | 66.6667 | 99.0050 | 4 | 5 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 70.0000 | 100.0000 | 53.8462 | 99.7623 | 6 | 0 | 7 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 82.7315 | 70.7276 | 99.6429 | 31.3725 | 836 | 346 | 837 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 87.7870 | 78.7671 | 99.1398 | 19.4107 | 460 | 124 | 461 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 53.6585 | 91.6667 | 37.9310 | 51.2605 | 22 | 2 | 22 | 36 | 36 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | homalt | 71.1111 | 66.6667 | 76.1905 | 90.5405 | 16 | 8 | 16 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | homalt | 84.3750 | 84.3750 | 84.3750 | 86.7220 | 54 | 10 | 54 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | homalt | 84.6154 | 84.6154 | 84.6154 | 87.3047 | 55 | 10 | 55 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | homalt | 85.0746 | 85.0746 | 85.0746 | 87.3106 | 57 | 10 | 57 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | homalt | 57.1429 | 50.0000 | 66.6667 | 93.2836 | 6 | 6 | 6 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | homalt | 78.7879 | 76.4706 | 81.2500 | 88.3636 | 26 | 8 | 26 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | homalt | 78.8732 | 77.7778 | 80.0000 | 88.6731 | 28 | 8 | 28 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | homalt | 79.4521 | 78.3784 | 80.5556 | 88.5350 | 29 | 8 | 29 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 95.0495 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | homalt | 75.0000 | 69.2308 | 81.8182 | 89.0000 | 18 | 8 | 18 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | homalt | 74.0741 | 71.4286 | 76.9231 | 88.9831 | 20 | 8 | 20 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | homalt | 75.0000 | 72.4138 | 77.7778 | 88.7500 | 21 | 8 | 21 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 96.1538 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.7447 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | homalt | 90.5115 | 94.0000 | 87.2727 | 92.8664 | 47 | 3 | 48 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | * | 88.2353 | 88.2353 | 88.2353 | 54.0541 | 15 | 2 | 15 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | homalt | 85.7143 | 100.0000 | 75.0000 | 57.8947 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002compoundhet | het | 6.2171 | 57.4468 | 3.2864 | 65.0533 | 27 | 20 | 14 | 412 | 412 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002compoundhet | homalt | 8.3333 | 100.0000 | 4.3478 | 68.0556 | 3 | 0 | 3 | 66 | 66 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 74.4494 | 60.3774 | 97.0745 | 67.4459 | 352 | 231 | 365 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 90.9004 | 97.5410 | 85.1064 | 84.7403 | 119 | 3 | 120 | 21 | 21 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 88.3741 | 83.1461 | 94.3038 | 79.3464 | 148 | 30 | 149 | 9 | 9 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.8850 | 84.2593 | 91.8367 | 77.9775 | 91 | 17 | 90 | 8 | 8 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6930 | 94.2857 | 97.1429 | 83.7209 | 33 | 2 | 34 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.2551 | 87.6404 | 95.1807 | 72.6974 | 78 | 11 | 79 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 91.2621 | 88.6792 | 94.0000 | 70.4142 | 47 | 6 | 47 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1429 | 100.0000 | 94.4444 | 80.6452 | 16 | 0 | 17 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 50.9091 | 51.8519 | 50.0000 | 88.3929 | 14 | 13 | 13 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 96.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |