PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9751-9800 / 86044 show all
anovak-vgINDELI1_5HG002complexvarhomalt
67.3378
96.3340
51.7586
45.0635
12955493131561226211858
96.7053
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.0900
99.5359
98.6480
56.8443
66483166409188
96.7033
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
75.9055
69.1535
84.1187
50.6034
4822154829188
96.7033
gduggal-bwafbINDELI1_5*homalt
98.8253
98.7076
98.9433
52.6434
5964778159646637616
96.7033
gduggal-bwafbINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.8219
73.9368
91.5896
61.6810
392913852973273264
96.7033
gduggal-snapfbINDELI6_15*homalt
78.8948
72.1430
87.0410
39.6459
450117384480667645
96.7016
mlin-fermikitINDELD1_5HG002complexvarhomalt
96.1786
96.9145
95.4537
57.9255
1027132710183485469
96.7010
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
50.9371
34.6330
96.2465
52.9921
384672595436212205
96.6981
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
44.8723
35.0206
62.4365
72.5902
22144108221413321288
96.6967
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
44.8723
35.0206
62.4365
72.5902
22144108221413321288
96.6967
ghariani-varprowlINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
69.3724
82.3394
59.9338
79.2083
35977362242234
96.6942
asubramanian-gatkINDELI1_5HG002compoundhethomalt
72.5446
98.7842
57.3192
87.8143
3254325242234
96.6942
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
25.9640
21.0884
33.7719
34.7639
155580154302292
96.6887
mlin-fermikitSNP*map_sirenhomalt
84.4526
80.6077
88.6825
45.6664
44460106964445356735485
96.6861
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
52.6451
49.8736
55.7428
73.7700
17761785178614181371
96.6855
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
79.6536
70.7724
91.0837
56.4003
275811391849181175
96.6851
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
82.4798
81.3830
83.6066
48.1586
153351533029
96.6667
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
58.1944
52.8736
64.7059
67.8030
4641553029
96.6667
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
68.9695
59.5506
81.9277
62.6126
106721363029
96.6667
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
63.4640
52.6659
79.8319
50.6633
18571669475120116
96.6667
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
71.1515
58.0150
91.9786
49.4595
147310663443029
96.6667
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
63.4640
52.6659
79.8319
50.6633
18571669475120116
96.6667
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.5450
87.1936
98.5962
31.1755
206330321073029
96.6667
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8385
93.1558
98.6804
28.6536
668349167309087
96.6667
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.5615
93.9687
99.3014
25.3607
378624342643029
96.6667
bgallagher-sentieonINDELI16_PLUS*homalt
97.0698
99.7438
94.5355
72.0279
1557415579087
96.6667
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.3628
100.0000
87.5519
69.2994
21102113029
96.6667
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9440
94.4163
99.6108
25.7275
764345276783029
96.6667
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9287
94.3839
99.6144
27.9429
771445977503029
96.6667
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4212
93.4764
99.5575
27.4245
670646867503029
96.6667
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
55.1724
41.2831
83.1461
72.8659
2964212966058
96.6667
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
58.1841
43.2904
88.7006
71.9789
4716174716058
96.6667
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
91.0964
94.2553
88.1423
65.1755
443274466058
96.6667
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.3988
100.0000
91.2023
70.8298
31103113029
96.6667
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.6889
92.8520
96.5999
48.0063
255919725579087
96.6667
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
94.4878
95.3191
93.6709
57.5649
448224443029
96.6667
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.5261
91.8816
95.2305
60.9680
121110711986058
96.6667
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.1701
95.0166
99.4235
24.0070
516727151743029
96.6667
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0680
94.6510
99.6117
25.8826
766243376963029
96.6667
ckim-isaacINDELD6_15HG002compoundhethomalt
40.0881
54.1667
31.8182
65.3543
1311143029
96.6667
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.2559
99.3087
99.2032
69.9329
37352637353029
96.6667
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2559
99.3087
99.2032
69.9329
37352637353029
96.6667
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.0322
99.6364
96.4789
69.7121
82238223029
96.6667
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.0322
99.6364
96.4789
69.7121
82238223029
96.6667
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
58.9524
49.6815
72.4771
51.3393
7879793029
96.6667
cchapple-customINDEL**homalt
99.5578
99.7843
99.3323
55.6558
124902270124673838810
96.6587
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_11to50*
97.3954
97.0977
97.6949
62.0775
35530106235516838810
96.6587
mlin-fermikitINDELI16_PLUS**
82.9403
77.8109
88.7937
66.6528
496214154976628607
96.6561
rpoplin-dv42INDELI6_15**
96.3018
94.7670
97.8872
49.6208
23524129923536508491
96.6535
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.1659
40.4511
53.7611
64.5212
269396243209202
96.6507