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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9501-9550 / 86044 show all
rpoplin-dv42INDEL*HG002complexvarhetalt
94.3915
91.0246
98.0170
68.2440
336733234607068
97.1429
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3292
95.2834
99.4647
22.7525
650532265043534
97.1429
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4228
99.8304
99.0185
72.8574
3531635313534
97.1429
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.6090
95.7958
99.4921
26.3939
681329968563534
97.1429
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6714
99.9177
99.4264
57.8940
6067560673534
97.1429
ltrigg-rtg1INDELI1_5HG002compoundhethomalt
91.5810
93.0091
90.1961
73.3184
306233223534
97.1429
jli-customINDELD16_PLUSHG002compoundhethet
91.9260
95.5556
88.5621
57.3816
387182713534
97.1429
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
92.9504
91.0204
94.9640
50.7442
669666603534
97.1429
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2231
99.8046
98.6484
46.1418
51071051097068
97.1429
dgrover-gatkINDEL**hetalt
96.9073
94.2584
99.7094
58.4640
237881449240187068
97.1429
astatham-gatkINDELD16_PLUSHG002compoundhethet
88.8320
99.5062
80.2260
58.8850
40322847068
97.1429
astatham-gatkINDELI16_PLUS*homalt
97.6467
99.6797
95.6950
72.0858
1556515567068
97.1429
asubramanian-gatkINDELI6_15HG002complexvarhomalt
98.2899
99.4234
97.1820
55.6903
1207712073534
97.1429
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
54.3642
39.0110
89.6450
28.3898
92314433033534
97.1429
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
78.4796
67.4314
93.8575
34.5759
299814488022525510
97.1429
gduggal-bwavardINDEL*HG002compoundhethet
23.2106
89.3014
13.3387
58.9532
365643837932464323937
97.1351
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3899
99.7736
97.0441
62.0464
114582611458349339
97.1347
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
74.0005
97.9533
59.4604
43.3923
101942131022669726772
97.1314
ckim-isaacINDEL*HG002compoundhethomalt
60.3591
67.2012
54.7816
76.0328
461225464383372
97.1279
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
83.4657
81.8519
85.1445
71.6183
41909294184730709
97.1233
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.5115
98.1663
98.8593
41.0712
2409045024092278270
97.1223
gduggal-bwavardINDEL*HG002compoundhet*
14.6648
14.4226
14.9152
58.8895
43212563943292469523984
97.1209
gduggal-bwafbINDELD6_15HG002complexvarhomalt
93.8652
96.3216
91.5309
60.1040
1126431124104101
97.1154
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
98.5033
98.1180
98.8917
42.6441
92801789280104101
97.1154
hfeng-pmm1INDEL*HG002compoundhet*
94.8334
92.5834
97.1953
59.6665
27738222227620797774
97.1142
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
83.9976
93.6170
76.1708
68.1299
57239553173168
97.1098
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.3029
96.6649
86.5044
61.6244
111013831108917301680
97.1098
asubramanian-gatkINDELD6_15HG002compoundhethet
89.0353
96.6121
82.5605
68.4177
82729819173168
97.1098
mlin-fermikitINDEL*lowcmp_SimpleRepeat_triTR_11to50het
94.9292
96.3368
93.5621
42.6632
35241343517242235
97.1074
jpowers-varprowlINDELD1_5*het
92.8158
97.3223
88.7081
61.6875
852292345852211084810534
97.1055
ltrigg-rtg2INDELI16_PLUSHG002compoundhet*
88.6244
82.1745
96.1730
41.5559
176138217346967
97.1014
hfeng-pmm3INDELI1_5*homalt
99.7866
99.8014
99.7717
52.1729
6030812060313138134
97.1014
ckim-vqsrINDELI1_5HG002compoundhethet
94.8823
98.1176
91.8536
86.7262
834167786967
97.1014
ckim-vqsrINDELD16_PLUSHG002compoundhethet
88.8043
99.2593
80.3419
59.7015
40232826967
97.1014
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
91.9743
90.3292
93.6805
71.4710
5820062316021540623944
97.0950
hfeng-pmm1INDEL**homalt
99.6836
99.7787
99.5886
55.4406
124895277124903516501
97.0930
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2376
96.9527
97.5243
55.9478
36747115536556928901
97.0905
mlin-fermikitINDELD1_5HG002compoundhethet
59.9144
80.4398
47.7343
63.4097
1390338138015111467
97.0880
eyeh-varpipeINDELD6_15HG002compoundhethet
60.1947
80.0234
48.2412
75.0000
68517196103100
97.0874
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
78.5748
67.1057
94.7725
26.6989
18348995602309300
97.0874
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
72.0906
64.0796
82.3907
55.6695
644361641137133
97.0803
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
78.8211
67.4076
94.8874
32.5021
260812617628411399
97.0803
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.3676
91.1466
93.6218
50.4528
25122442510171166
97.0760
gduggal-bwafbINDELD6_15HG002compoundhet*
88.7012
84.9518
92.7969
32.0774
767213598799683663
97.0717
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
49.8073
85.3306
35.1672
63.7131
82614283115321487
97.0627
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
88.9406
86.2302
91.8269
26.6314
382613823433
97.0588
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
96.7679
94.4049
99.2523
24.5186
450526745133433
97.0588
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.2480
98.0066
94.5513
51.4774
590125903433
97.0588
jli-customINDELD6_15HG002compoundhethetalt
97.6428
95.7919
99.5667
24.6880
780834378123433
97.0588
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.1277
91.4144
97.0070
58.8480
220420722046866
97.0588