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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9451-9500 / 86044 show all
gduggal-snapfbINDELI6_15HG002compoundhethetalt
70.7588
57.7252
91.3944
38.7805
492836091147108105
97.2222
gduggal-snapfbINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
43.4048
30.1435
77.5000
51.4416
2525842487270
97.2222
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
64.6284
57.3034
74.1007
75.4850
102761033635
97.2222
jli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.3153
97.1961
99.4606
33.3866
662119166383635
97.2222
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.7460
99.7576
95.8140
68.5212
82328243635
97.2222
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.7460
99.7576
95.8140
68.5212
82328243635
97.2222
ltrigg-rtg2INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.2269
89.9059
98.9842
47.2854
343838635083635
97.2222
jpowers-varprowlINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
63.9254
60.6557
67.5676
77.1134
7448753635
97.2222
jpowers-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
68.7985
61.1111
78.6982
64.0426
132841333635
97.2222
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
89.9729
96.4912
84.2795
74.3705
385143867270
97.2222
rpoplin-dv42INDELD6_15HG002complexvarhetalt
92.5754
89.1412
96.2848
45.0369
9031109333635
97.2222
rpoplin-dv42INDELD6_15HG002compoundhethetalt
96.0843
92.8720
99.5267
21.0341
757058175703635
97.2222
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
85.9187
79.7297
93.1494
34.9226
118309797270
97.2222
ckim-gatkINDEL**hetalt
95.5159
91.6749
99.6928
55.9040
231362101233657270
97.2222
cchapple-customINDELI6_15HG002complexvarhomalt
98.1176
99.2586
97.0025
48.4991
1205911653635
97.2222
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.1017
89.1985
95.2002
47.3849
13188159714241718698
97.2145
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
80.6843
72.0726
91.6333
55.4102
13115082749251244
97.2112
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
80.6843
72.0726
91.6333
55.4102
13115082749251244
97.2112
jlack-gatkINDELI1_5HG002compoundhet*
93.1060
91.1379
95.1609
67.4017
11261109511268573557
97.2077
mlin-fermikitINDEL*lowcmp_SimpleRepeat_triTR_11to50*
94.6117
94.0740
95.1557
42.5447
63343996325322313
97.2050
hfeng-pmm2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6591
99.7822
99.5363
71.5494
306946730694143139
97.2028
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
70.3339
57.7444
89.9436
58.0772
384281957107104
97.1963
eyeh-varpipeINDEL*HG002complexvarhetalt
61.1209
45.5799
92.7426
76.1697
168620133642285277
97.1930
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.2647
99.7712
98.7633
53.6568
56681356707169
97.1831
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
71.0493
66.1017
76.7974
70.5486
2341202357169
97.1831
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.4810
98.9726
90.3794
82.0961
86796677169
97.1831
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
96.5522
94.7192
98.4575
25.9492
452025245327169
97.1831
ckim-gatkINDELI1_5HG002compoundhethet
95.1264
98.8235
91.6959
86.6176
840107847169
97.1831
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
83.8326
78.4242
90.0421
57.6603
6471786427169
97.1831
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
83.8326
78.4242
90.0421
57.6603
6471786427169
97.1831
mlin-fermikitINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.8660
86.0092
83.7529
81.8446
375613667169
97.1831
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.0244
95.4725
96.5827
67.7509
3618617163612012781242
97.1831
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8814
97.0742
98.7022
53.8225
2159965121600284276
97.1831
jmaeng-gatkINDELD6_15*homalt
98.8031
99.8261
97.8008
55.3272
6315116315142138
97.1831
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.0566
99.8141
96.3599
59.7337
375973759142138
97.1831
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.0566
99.8141
96.3599
59.7337
375973759142138
97.1831
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50het
89.4933
92.7475
86.4597
53.2254
1461711431448222682204
97.1781
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
84.4168
96.1004
75.2662
52.8425
140475701498449244785
97.1771
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
43.5285
42.1324
45.0202
75.7921
42445829423151675021
97.1744
gduggal-bwavardINDELD6_15**
62.6145
59.4780
66.1003
55.5649
15519105731536778817658
97.1704
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.6091
98.6593
98.5590
59.0674
7285997250106103
97.1698
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.9872
99.1753
96.8273
68.0073
3247273235106103
97.1698
mlin-fermikitINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
92.8446
92.0624
93.6403
70.3210
8695274978681358965729
97.1676
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200het
62.6355
82.0408
50.6542
55.8581
40288542528513
97.1591
asubramanian-gatkINDELI6_15*homalt
97.0392
99.0223
95.1340
55.6784
6178616178316307
97.1519
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
66.1849
94.2197
51.0078
73.0013
32620329316307
97.1519
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
29.8387
20.4965
54.8298
62.6973
6112370596491477
97.1487
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
66.5015
91.0448
52.3810
62.2662
54954539490476
97.1429
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
43.4690
29.6943
81.0811
66.1792
2044831503534
97.1429
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
81.1184
79.6209
82.6733
50.0000
168431673534
97.1429