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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9151-9200 / 86044 show all
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8928
99.8104
96.0474
55.7633
315963159130127
97.6923
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
88.9148
94.6211
83.8576
74.5711
20231152026390381
97.6923
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.2413
93.5539
90.9650
64.4972
1699511711699516881649
97.6896
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.2413
93.5539
90.9650
64.4972
1699511711699516881649
97.6896
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
44.4394
41.1352
48.3208
59.7393
726910402722377257546
97.6828
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
44.4394
41.1352
48.3208
59.7393
726910402722377257546
97.6828
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0502
96.4694
97.6380
53.4915
1426352214261345337
97.6812
mlin-fermikitINDELI1_5HG002complexvar*
96.3771
95.3032
97.4754
51.5661
31796156731622819800
97.6801
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
41.1619
58.5185
31.7460
42.9003
795660129126
97.6744
qzeng-customSNP*map_l125_m0_e0homalt
77.7882
64.0644
98.9949
72.2676
4300241242354342
97.6744
rpoplin-dv42INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.6681
94.0715
99.4120
57.9684
14503914145418684
97.6744
rpoplin-dv42INDELD1_5HG002compoundhethetalt
96.8685
94.3226
99.5556
55.8683
963658096324342
97.6744
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
87.2658
91.9890
83.0040
81.7064
333292104342
97.6744
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.8043
99.9450
97.6894
60.7922
3636236368684
97.6744
bgallagher-sentieonINDELD1_5*hetalt
96.6974
93.9971
99.5574
61.8361
963061596724342
97.6744
anovak-vgINDELI6_15segduphomalt
59.8909
80.8511
47.5610
87.6506
389394342
97.6744
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.8405
84.9119
86.7896
57.5804
17843171695258252
97.6744
cchapple-customINDELI1_5HG002complexvarhomalt
99.5426
99.4200
99.6654
46.3203
1337078128094342
97.6744
ckim-vqsrINDELI6_15HG002complexvar*
98.1251
97.1828
99.0859
57.0293
465713546614342
97.6744
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.7497
95.9658
99.6012
27.0945
10657448107394342
97.6744
jli-customINDELD1_5HG002compoundhethomalt
86.9565
99.6564
77.1277
84.9600
29012908684
97.6744
hfeng-pmm1INDELD6_15*homalt
99.4474
99.5732
99.3220
50.6075
62992762994342
97.6744
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1261
99.3893
98.8642
54.0422
37432337434342
97.6744
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1261
99.3893
98.8642
54.0422
37432337434342
97.6744
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8197
99.8356
99.8037
72.1124
2186336218634342
97.6744
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2974
99.4333
99.1620
40.9075
50882950884342
97.6744
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3494
99.4543
99.2447
49.9340
56503156504342
97.6744
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2550
99.5338
98.9778
48.7637
83273983278684
97.6744
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.9873
91.5781
96.5267
61.0569
120711111954342
97.6744
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.0202
97.6165
72.2212
39.7852
7208176769329592890
97.6681
mlin-fermikitINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
79.1842
93.5216
68.6585
57.6883
56339563257251
97.6654
eyeh-varpipeINDELD16_PLUS**
59.3408
53.1250
67.2039
51.2916
36043180358617501709
97.6571
jlack-gatkINDEL**homalt
99.2685
99.7907
98.7518
57.7386
12491026212492315791542
97.6567
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.9977
85.1023
86.9121
57.7994
17883131700256250
97.6562
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
84.4600
82.3881
86.6388
62.5342
828177830128125
97.6562
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.8873
84.9119
86.8852
57.3613
17843171696256250
97.6562
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_diTR_51to200het
78.0432
83.2653
73.4375
79.0713
408822358583
97.6471
asubramanian-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
94.1755
98.4686
90.2411
69.2008
643107868583
97.6471
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
88.0705
92.7235
83.8622
38.1946
6193486618411901162
97.6471
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
96.9441
95.7602
98.1576
42.5181
90574019057170166
97.6471
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
51.6769
55.4825
48.3599
47.7729
506406516551538
97.6407
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
56.3707
87.9455
41.4787
65.8135
3553487356850344915
97.6361
ltrigg-rtg1INDEL*HG002compoundhethomalt
85.9787
93.5860
79.5152
70.0762
64244656169165
97.6331
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
62.8790
57.8527
68.8617
41.8554
79755810793735893504
97.6317
jpowers-varprowlINDEL***
86.4885
85.2886
87.7226
56.7888
293855506872936274109540121
97.6299
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.9526
84.9119
87.0190
57.3989
17843171696253247
97.6285
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.5092
75.5024
90.9494
56.1947
634920606351632617
97.6266
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
48.1828
41.3707
57.6805
50.9762
132818821318967944
97.6215
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
92.3449
94.3042
90.4654
62.2051
1606971594168164
97.6190
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
77.7997
63.9808
99.2322
42.2569
106886017108568482
97.6190