PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8801-8850 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0877 | 94.7254 | 99.5709 | 28.2155 | 13038 | 726 | 13226 | 57 | 56 | 98.2456 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 47.0793 | 34.9282 | 72.1951 | 63.7809 | 146 | 272 | 148 | 57 | 56 | 98.2456 | |
| astatham-gatk | INDEL | * | HG002compoundhet | hetalt | 96.8345 | 94.0747 | 99.7612 | 51.5025 | 23688 | 1492 | 23812 | 57 | 56 | 98.2456 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.3348 | 92.1922 | 81.1772 | 59.7644 | 5160 | 437 | 5158 | 1196 | 1175 | 98.2441 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002compoundhet | het | 81.6272 | 92.2353 | 73.2075 | 84.1151 | 784 | 66 | 776 | 284 | 279 | 98.2394 | |
| jpowers-varprowl | INDEL | * | * | het | 88.4014 | 94.9432 | 82.7031 | 60.8976 | 184316 | 9817 | 184394 | 38565 | 37886 | 98.2393 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 92.3938 | 89.4378 | 95.5519 | 45.2869 | 12329 | 1456 | 13383 | 623 | 612 | 98.2343 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 64.1207 | 64.2111 | 64.0306 | 63.4499 | 1168 | 651 | 1004 | 564 | 554 | 98.2270 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 64.1207 | 64.2111 | 64.0306 | 63.4499 | 1168 | 651 | 1004 | 564 | 554 | 98.2270 | |
| mlin-fermikit | INDEL | D6_15 | * | het | 90.4589 | 94.5825 | 86.6799 | 51.7766 | 10964 | 628 | 10952 | 1683 | 1653 | 98.2175 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.7166 | 90.1734 | 93.3134 | 34.6469 | 1560 | 170 | 1563 | 112 | 110 | 98.2143 | |
| dgrover-gatk | INDEL | * | HG002compoundhet | hetalt | 96.9439 | 94.2772 | 99.7659 | 51.7927 | 23739 | 1441 | 23863 | 56 | 55 | 98.2143 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 38.3408 | 90.4762 | 24.3243 | 23.7113 | 19 | 2 | 18 | 56 | 55 | 98.2143 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.7404 | 96.3511 | 97.1328 | 51.7215 | 13282 | 503 | 13280 | 392 | 385 | 98.2143 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002compoundhet | het | 84.2722 | 97.1154 | 74.4292 | 84.1189 | 202 | 6 | 163 | 56 | 55 | 98.2143 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.8763 | 98.9362 | 93.0000 | 62.1928 | 744 | 8 | 744 | 56 | 55 | 98.2143 | |
| cchapple-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 3.4483 | 100.0000 | 1.7544 | 69.5187 | 3 | 0 | 1 | 56 | 55 | 98.2143 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 44.2166 | 52.6316 | 38.1215 | 75.7697 | 70 | 63 | 69 | 112 | 110 | 98.2143 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.0360 | 94.2922 | 91.8129 | 79.4100 | 826 | 50 | 628 | 56 | 55 | 98.2143 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 54.7528 | 73.3333 | 43.6844 | 58.3973 | 1034 | 376 | 1041 | 1342 | 1318 | 98.2116 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3343 | 99.9317 | 98.7440 | 74.3514 | 30740 | 21 | 30740 | 391 | 384 | 98.2097 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.9552 | 65.9379 | 70.1000 | 59.0467 | 4011 | 2072 | 3927 | 1675 | 1645 | 98.2090 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8033 | 97.6268 | 97.9804 | 52.5687 | 10819 | 263 | 10819 | 223 | 219 | 98.2063 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.1157 | 91.3786 | 83.2329 | 63.6787 | 2247 | 212 | 2209 | 445 | 437 | 98.2022 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 86.2115 | 84.1466 | 88.3803 | 58.2216 | 13503 | 2544 | 13516 | 1777 | 1745 | 98.1992 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.5071 | 83.4165 | 96.5571 | 49.6329 | 11705 | 2327 | 3113 | 111 | 109 | 98.1982 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6995 | 99.7594 | 99.6396 | 71.1645 | 30687 | 74 | 30687 | 111 | 109 | 98.1982 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 56.7870 | 50.7723 | 64.4183 | 57.0048 | 1808 | 1753 | 1805 | 997 | 979 | 98.1946 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 71.4933 | 61.7706 | 84.8485 | 75.6702 | 307 | 190 | 308 | 55 | 54 | 98.1818 | |
| qzeng-custom | SNP | ti | map_l125_m2_e0 | homalt | 83.3237 | 71.7644 | 99.3217 | 66.9963 | 8151 | 3207 | 8054 | 55 | 54 | 98.1818 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.4422 | 96.4266 | 98.4794 | 49.9423 | 10686 | 396 | 10686 | 165 | 162 | 98.1818 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | hetalt | 95.1803 | 94.0828 | 96.3038 | 77.4750 | 1272 | 80 | 1433 | 55 | 54 | 98.1818 | |
| ltrigg-rtg1 | SNP | ti | HG002complexvar | homalt | 99.9028 | 99.8341 | 99.9715 | 18.2456 | 193142 | 321 | 193049 | 55 | 54 | 98.1818 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.4411 | 98.4169 | 87.1495 | 60.2600 | 373 | 6 | 373 | 55 | 54 | 98.1818 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7545 | 95.9460 | 99.6325 | 60.1730 | 14792 | 625 | 14910 | 55 | 54 | 98.1818 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.1110 | 94.2922 | 91.9591 | 79.3103 | 826 | 50 | 629 | 55 | 54 | 98.1818 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | * | 98.1726 | 97.5167 | 98.8375 | 57.3399 | 4673 | 119 | 4676 | 55 | 54 | 98.1818 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.8395 | 42.0033 | 50.4468 | 47.0151 | 8651 | 11945 | 8637 | 8484 | 8329 | 98.1730 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 61.1681 | 90.3704 | 46.2295 | 44.2413 | 122 | 13 | 141 | 164 | 161 | 98.1707 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.4074 | 92.9624 | 64.8574 | 57.8355 | 568 | 43 | 705 | 382 | 375 | 98.1675 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 62.0349 | 81.0976 | 50.2283 | 77.7439 | 133 | 31 | 110 | 109 | 107 | 98.1651 | |
| ltrigg-rtg1 | INDEL | * | * | hetalt | 95.1862 | 91.1955 | 99.5422 | 68.0582 | 23015 | 2222 | 23702 | 109 | 107 | 98.1651 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0329 | 91.8045 | 94.2947 | 54.2066 | 3607 | 322 | 3603 | 218 | 214 | 98.1651 | |
| astatham-gatk | INDEL | * | * | homalt | 99.5755 | 99.8874 | 99.2657 | 58.8575 | 125031 | 141 | 125041 | 925 | 908 | 98.1622 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 33.2379 | 24.7453 | 50.6061 | 78.6131 | 170 | 517 | 167 | 163 | 160 | 98.1595 | |
| gduggal-snapfb | INDEL | D6_15 | HG002complexvar | homalt | 79.2659 | 75.0214 | 84.0196 | 53.7834 | 877 | 292 | 857 | 163 | 160 | 98.1595 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 88.5502 | 97.0814 | 81.3973 | 49.1056 | 1896 | 57 | 1899 | 434 | 426 | 98.1567 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2372 | 99.7214 | 96.7966 | 60.1274 | 11452 | 32 | 11452 | 379 | 372 | 98.1530 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 77.1546 | 63.0485 | 99.3919 | 33.0569 | 8678 | 5086 | 8826 | 54 | 53 | 98.1481 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 71.5746 | 78.1250 | 66.0377 | 64.7450 | 225 | 63 | 210 | 108 | 106 | 98.1481 | |