PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84751-84800 / 86044 show all
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*map_l100_m0_e0hetalt
0.0000
37.5000
0.0000
0.0000
610000
anovak-vgSNP*map_l100_m1_e0hetalt
0.0000
29.2683
0.0000
0.0000
1229000
anovak-vgSNP*map_l100_m2_e0hetalt
0.0000
30.9524
0.0000
0.0000
1329000
anovak-vgSNP*map_l100_m2_e1hetalt
0.0000
30.2326
0.0000
0.0000
1330000
anovak-vgSNP*map_l125_m0_e0hetalt
0.0000
44.4444
0.0000
0.0000
45000
anovak-vgSNP*map_l125_m1_e0hetalt
0.0000
30.0000
0.0000
0.0000
921000
anovak-vgSNP*map_l125_m2_e0hetalt
0.0000
30.0000
0.0000
0.0000
921000
anovak-vgSNP*map_l125_m2_e1hetalt
0.0000
30.0000
0.0000
0.0000
921000
anovak-vgSNP*map_l150_m0_e0hetalt
0.0000
66.6667
0.0000
0.0000
21000
anovak-vgSNP*map_l150_m1_e0hetalt
0.0000
25.0000
0.0000
0.0000
515000
anovak-vgSNP*map_l150_m2_e0hetalt
0.0000
25.0000
0.0000
0.0000
515000
anovak-vgSNP*map_l150_m2_e1hetalt
0.0000
25.0000
0.0000
0.0000
515000
anovak-vgSNP*map_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*map_l250_m1_e0hetalt
0.0000
25.0000
0.0000
0.0000
13000
anovak-vgSNP*map_l250_m2_e0hetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgSNP*map_l250_m2_e1hetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgSNP*map_sirenhetalt
0.0000
25.9259
0.0000
0.0000
2160000
anovak-vgSNP*segduphetalt
0.0000
14.2857
0.0000
0.0000
16000
anovak-vgSNP*segdupwithalt*
0.0000
100.0000
00000
anovak-vgSNP*segdupwithalthet
0.0000
100.0000
00000
anovak-vgSNP*segdupwithalthetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*segdupwithalthomalt
0.0000
100.0000
00000
anovak-vgSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPti*hetalt
0.0000
15.8076
0.0000
0.0000
92490000
anovak-vgSNPtiHG002complexvarhetalt
0.0000
17.3913
0.0000
0.0000
36171000
anovak-vgSNPtiHG002compoundhethetalt
0.0000
15.8895
0.0000
0.0000
92487000
anovak-vgSNPtidecoyhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtidecoyhomalt
0.0000
0.0000
100.0000
99.9959
00100
anovak-vgSNPtifunc_cdshetalt
0.0000
37.5000
0.0000
0.0000
35000
anovak-vgSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
16.6667
0.0000
0.0000
15000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
25.0000
0.0000
0.0000
39000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000