PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
83951-84000 / 86044 show all | |||||||||||||||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.3105 | 11 | 0 | 11 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9184 | 2 | 0 | 2 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2687 | 5 | 0 | 5 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 22 | 0 | 22 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.0213 | 14 | 0 | 14 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 2 | 0 | 2 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 6 | 0 | 6 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.8571 | 22 | 0 | 22 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.1014 | 14 | 0 | 14 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7213 | 2 | 0 | 2 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 6 | 0 | 6 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.0463 | 43 | 6 | 43 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 17 | 0 | 17 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 10 | 0 | 10 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | het | 99.3949 | 98.7970 | 100.0000 | 64.2575 | 657 | 8 | 633 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | HG002compoundhet | hetalt | 95.0877 | 90.6355 | 100.0000 | 45.8521 | 1897 | 196 | 1919 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 9 | 0 | 9 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1220 | 90.6977 | 100.0000 | 77.4869 | 78 | 8 | 86 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.8485 | 18 | 0 | 20 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7183 | 99.4382 | 100.0000 | 81.1902 | 177 | 1 | 177 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5349 | 99.0741 | 100.0000 | 80.6985 | 107 | 1 | 105 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.9740 | 35 | 0 | 37 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 85.5967 | 35 | 0 | 35 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.6164 | 89 | 0 | 89 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.2336 | 53 | 0 | 53 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 20 | 0 | 20 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.1579 | 16 | 0 | 16 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.2481 | 25 | 2 | 20 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7273 | 86.4407 | 100.0000 | 72.6829 | 51 | 8 | 56 | 0 | 0 |