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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8201-8250 / 86044 show all
eyeh-varpipeINDEL*HG002compoundhet*
44.6205
43.3845
45.9289
60.1662
1299816962128161508814950
99.0854
jpowers-varprowlINDELD6_15HG002compoundhet*
9.9769
8.5262
12.0225
38.0227
770826176856205568
99.0747
gduggal-bwaplatINDELD1_5*hetalt
83.8440
73.7042
97.2186
75.9425
755126947550216214
99.0741
ckim-gatkINDEL*HG002compoundhet*
93.9895
92.8338
95.1743
62.6651
2781321472769014041391
99.0741
cchapple-customINDELI6_15*homalt
98.0872
99.5993
96.6202
48.7819
6214256175216214
99.0741
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2190
99.9172
98.5304
36.2675
724167241108107
99.0741
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
74.5911
64.9460
87.6005
39.3454
52342825763108107
99.0741
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
74.5911
64.9460
87.6005
39.3454
52342825763108107
99.0741
mlin-fermikitINDELI1_5HG002compoundhet*
72.7922
67.2062
79.3909
62.5413
83044052829021522132
99.0706
eyeh-varpipeINDELI6_15**
71.2994
63.0343
82.0590
39.8519
1564791761573434403408
99.0698
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.6050
50.5432
64.3189
53.8060
977956968537532
99.0689
ckim-dragenINDELI1_5HG002compoundhet*
94.8982
93.4283
96.4151
65.5477
1154481211538429425
99.0676
eyeh-varpipeINDELI6_15*hetalt
42.6506
27.4354
95.7540
48.5714
234662052413107106
99.0654
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.5902
99.5017
84.8442
51.7430
5993599107106
99.0654
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.7994
98.6540
98.9452
53.8867
1004113710037107106
99.0654
mlin-fermikitINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
84.2223
89.4397
79.5802
65.5942
41549417107106
99.0654
ghariani-varprowlINDELI6_15*het
73.9358
94.0397
60.9136
54.3281
9435598949460926035
99.0643
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
87.6933
79.6065
97.6088
41.6096
432911094327106105
99.0566
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8446
99.8948
97.8162
47.4789
474854748106105
99.0566
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
45.9086
42.3685
50.0943
72.1654
21182881212521172097
99.0553
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
45.9086
42.3685
50.0943
72.1654
21182881212521172097
99.0553
jmaeng-gatkINDEL*HG002compoundhet*
93.6190
92.3632
94.9094
62.9257
2767222882755614781464
99.0528
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
73.8957
69.0940
79.4146
45.3333
816365814211209
99.0521
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
73.7796
66.9983
82.0883
30.1926
4041991934422418
99.0521
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200het
58.5210
78.7755
46.5517
55.0388
386104459527522
99.0512
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.2425
97.6560
98.8360
46.5565
1783142817832210208
99.0476
gduggal-bwavardINDELD6_15HG002compoundhet*
10.9462
9.3899
13.1210
37.7051
848818383255095456
99.0379
ckim-dragenINDELI1_5*homalt
99.5565
99.7948
99.3194
55.1956
6030412460271413409
99.0315
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.2828
75.9897
97.1657
76.5450
706422327062206204
99.0291
eyeh-varpipeINDELD6_15HG002complexvarhetalt
51.3277
35.9329
89.8020
58.8427
364649907103102
99.0291
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
84.0483
87.8234
80.5844
69.4588
17312401710412408
99.0291
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
84.0483
87.8234
80.5844
69.4588
17312401710412408
99.0291
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.0166
98.1818
90.1905
68.4305
81015947103102
99.0291
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.0166
98.1818
90.1905
68.4305
81015947103102
99.0291
jmaeng-gatkINDELI1_5HG002compoundhet*
94.6029
91.9877
97.3711
66.5483
1136699011371307304
99.0228
eyeh-varpipeINDELD1_5HG002complexvarhetalt
66.7172
51.5533
94.5191
75.2098
6976551759102101
99.0196
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
29.0460
26.6974
31.8478
58.4515
16244459161534563422
99.0162
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
46.9190
44.4652
49.6593
57.4245
1926924066192421950619313
99.0106
gduggal-bwafbINDELI16_PLUS*homalt
86.5142
81.1659
92.6170
34.4514
12672941267101100
99.0099
jpowers-varprowlINDELD1_5HG002compoundhethet
35.3608
87.3843
22.1650
69.9316
1510218155054435389
99.0079
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
55.8126
45.6817
71.7174
42.4460
28883434659826022576
99.0008
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
55.8126
45.6817
71.7174
42.4460
28883434659826022576
99.0008
qzeng-customSNP*map_l125_m2_e1homalt
83.7240
72.4219
99.2062
67.7495
1269748351249810099
99.0000
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.1000
98.3080
92.0949
58.3471
116220116510099
99.0000
mlin-fermikitINDELD6_15HG002compoundhet*
69.7015
65.9174
73.9466
36.0645
59533078594920962075
98.9981
jpowers-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
47.5294
38.2286
62.8109
62.6047
505816505299296
98.9967
ckim-gatkINDELD1_5HG002compoundhet*
95.9834
94.5321
97.4800
66.2715
1156666911566299296
98.9967
ckim-vqsrINDELD1_5HG002compoundhet*
95.9661
94.4994
97.4791
66.2791
1156267311562299296
98.9967
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
55.7305
44.0570
75.8202
34.2652
173121981872597591
98.9950
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2664
99.8896
98.6509
37.0615
7239872399998
98.9899