PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8151-8200 / 86044 show all
mlin-fermikitINDELD6_15HG002compoundhethet
44.7280
80.2570
31.0032
43.1484
68716968315201507
99.1447
ckim-vqsrINDEL*HG002compoundhet*
93.9622
92.7503
95.2061
62.6940
2778821722766513931381
99.1385
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
81.8009
78.9787
84.8322
50.9671
1167731081167820882070
99.1379
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.4041
98.6072
75.3191
48.5214
3545354116115
99.1379
jpowers-varprowlINDELI16_PLUSHG002complexvarhet
71.5885
75.0376
68.4426
63.7803
499166501231229
99.1342
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.8104
37.5245
44.7270
52.3629
55489237550568036744
99.1327
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.5072
98.6072
75.4797
48.5181
3545354115114
99.1304
cchapple-customINDELI1_5*homalt
99.7155
99.8147
99.6166
51.9774
6031611259755230228
99.1304
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.5072
98.6072
75.4797
48.5746
3545354115114
99.1304
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_51to200het
60.4235
77.7551
49.4100
70.5217
381109335343340
99.1254
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
90.5188
94.0606
87.2340
71.9711
77649779114113
99.1228
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.5188
94.0606
87.2340
71.9711
77649779114113
99.1228
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7061
99.9315
99.4818
75.9939
218841521884114113
99.1228
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
84.8154
82.7107
87.0300
49.4577
91661916916613661354
99.1215
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
51.7650
93.7381
35.7550
67.8055
49433502902894
99.1131
hfeng-pmm2INDEL*HG002compoundhethomalt
70.6370
99.4169
54.7791
80.4614
6824682563558
99.1119
astatham-gatkINDELD6_15HG002compoundhet*
95.7191
95.2165
96.2270
36.2319
85994328595337334
99.1098
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
41.5565
39.2117
44.1996
50.5594
1486223040148441874018573
99.1089
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
48.0237
81.0651
34.1176
68.8073
1373258112111
99.1071
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
79.6367
72.0025
89.0817
63.6267
455217704569560555
99.1071
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
79.6367
72.0025
89.0817
63.6267
455217704569560555
99.1071
dgrover-gatkINDELD1_5HG002compoundhethet
96.0763
98.4375
93.8258
79.0071
1701271702112111
99.1071
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8182
41.5354
46.3666
49.7641
1328818704132781535915221
99.1015
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
46.2416
43.0804
49.9034
66.9082
7721020775778771
99.1003
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1709
99.7794
96.6134
55.6813
9500219500333330
99.0991
eyeh-varpipeINDELD6_15HG002compoundhethetalt
46.3719
30.5239
96.4480
28.8641
248856633014111110
99.0991
ckim-gatkINDELD6_15HG002compoundhet*
95.5310
94.8178
96.2551
36.1757
85634688559333330
99.0991
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
72.0736
97.5227
57.1579
53.3629
161441162512181207
99.0969
ckim-dragenINDELD6_15*homalt
97.3161
99.7471
95.0008
59.2976
6310166309332329
99.0964
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.5913
99.6283
91.8687
63.3516
3752143751332329
99.0964
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.5913
99.6283
91.8687
63.3516
3752143751332329
99.0964
bgallagher-sentieonINDELD1_5*homalt
99.7512
99.9530
99.5502
62.3527
489032348908221219
99.0950
hfeng-pmm2INDELI6_15HG002compoundhethomalt
21.9081
100.0000
12.3016
63.4253
31031221219
99.0950
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.8247
99.2858
94.4828
49.5258
9453689453552547
99.0942
astatham-gatkINDELD1_5HG002compoundhethet
96.0425
98.2639
93.9193
78.7076
1698301699110109
99.0909
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1914
99.7899
96.6433
56.0900
9501209501330327
99.0909
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7221
99.9452
99.4999
76.1475
218871221887110109
99.0909
dgrover-gatkINDELD6_15HG002compoundhet*
95.8086
95.3161
96.3062
36.3267
86084238604330327
99.0909
jmaeng-gatkINDELD16_PLUSHG002compoundhet*
94.6939
94.1478
95.2463
35.4713
22041372204110109
99.0909
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
74.9014
73.1006
76.7932
54.3353
356131364110109
99.0909
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
71.6109
63.4771
82.1356
31.7350
4712712023440436
99.0909
gduggal-bwafbINDELI6_15*hetalt
81.7221
72.8336
93.0818
54.0993
622823231480110109
99.0909
gduggal-bwavardINDELD6_15HG002compoundhethet
22.7477
94.6262
12.9278
37.5915
8104681654965446
99.0902
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
36.9719
33.9924
40.5239
46.0310
32156243321847234680
99.0896
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
27.1461
25.0340
29.6474
55.0756
184551185439435
99.0888
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
37.1546
81.6568
24.0484
55.6068
13831139439435
99.0888
ckim-vqsrINDELD6_15HG002compoundhet*
95.5291
94.7736
96.2967
36.1965
85594728555329326
99.0881
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.6453
92.3929
68.4589
73.0930
445993672447162060220414
99.0875
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
22.7618
14.1194
58.6792
46.6264
97590311219217
99.0868
ckim-dragenINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.9398
99.7251
94.3058
66.7272
3628103627219217
99.0868