PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81751-81800 / 86044 show all
asubramanian-gatkINDELD6_15func_cdshet
98.2456
96.5517
100.0000
54.0984
2812800
asubramanian-gatkINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
asubramanian-gatkINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
61.2903
1201200
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.0443
60600
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7941
30300
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.9167
10100
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7778
40400
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.3607
20200
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
91.3043
20200
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
92.8571
10100
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
66.6667
10100
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.6764
99.3548
100.0000
84.7525
154115400
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.0388
7407400
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
94.1176
88.8889
100.0000
99.3191
81800
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8087
60600
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.7425
99.4863
100.0000
18.9415
581358200
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.3545
94.8454
100.0000
23.3333
9259200
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
36.3636
2102100
asubramanian-gatkINDELD6_15map_l100_m0_e0hetalt
94.4444
89.4737
100.0000
83.6364
1721800
asubramanian-gatkINDELD6_15map_l100_m0_e0homalt
93.3333
87.5000
100.0000
91.1765
2132100
asubramanian-gatkINDELD6_15map_l100_m1_e0homalt
94.2149
89.0625
100.0000
87.5546
5775700
asubramanian-gatkINDELD6_15map_l100_m2_e0homalt
94.3089
89.2308
100.0000
87.9418
5875800
asubramanian-gatkINDELD6_15map_l100_m2_e1homalt
94.4882
89.5522
100.0000
87.8543
6076000
asubramanian-gatkINDELD6_15map_l125_m0_e0*
94.3820
89.3617
100.0000
94.9766
4254300
asubramanian-gatkINDELD6_15map_l125_m0_e0het
96.4286
93.1034
100.0000
95.6240
2722700
asubramanian-gatkINDELD6_15map_l125_m0_e0hetalt
90.9091
83.3333
100.0000
90.9091
51600
asubramanian-gatkINDELD6_15map_l125_m0_e0homalt
90.9091
83.3333
100.0000
94.2197
1021000
asubramanian-gatkINDELD6_15map_l125_m1_e0hetalt
94.4444
89.4737
100.0000
86.1789
1721700
asubramanian-gatkINDELD6_15map_l125_m1_e0homalt
95.3846
91.1765
100.0000
89.9676
3133100
asubramanian-gatkINDELD6_15map_l125_m2_e0hetalt
94.4444
89.4737
100.0000
87.6812
1721700
asubramanian-gatkINDELD6_15map_l125_m2_e0homalt
94.1176
88.8889
100.0000
90.2736
3243200
asubramanian-gatkINDELD6_15map_l125_m2_e1hetalt
91.8919
85.0000
100.0000
88.1119
1731700
asubramanian-gatkINDELD6_15map_l125_m2_e1homalt
94.2857
89.1892
100.0000
90.2077
3343300
asubramanian-gatkINDELD6_15map_l150_m0_e0*
96.7742
93.7500
100.0000
95.5840
3023100
asubramanian-gatkINDELD6_15map_l150_m0_e0het
97.4359
95.0000
100.0000
96.2451
1911900
asubramanian-gatkINDELD6_15map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
89.4737
50600
asubramanian-gatkINDELD6_15map_l150_m0_e0homalt
92.3077
85.7143
100.0000
95.6835
61600
asubramanian-gatkINDELD6_15map_l150_m1_e0hetalt
93.3333
87.5000
100.0000
91.2088
71800
asubramanian-gatkINDELD6_15map_l150_m1_e0homalt
93.8776
88.4615
100.0000
90.4167
2332300
asubramanian-gatkINDELD6_15map_l150_m2_e0hetalt
93.3333
87.5000
100.0000
92.1569
71800
asubramanian-gatkINDELD6_15map_l150_m2_e0homalt
92.3077
85.7143
100.0000
90.9434
2442400
asubramanian-gatkINDELD6_15map_l150_m2_e1hetalt
87.5000
77.7778
100.0000
92.4528
72800