PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81101-81150 / 86044 show all
astatham-gatkSNP*map_l150_m2_e0hetalt
97.4359
95.0000
100.0000
79.5699
1911900
astatham-gatkSNP*map_l150_m2_e1hetalt
97.4359
95.0000
100.0000
79.5699
1911900
astatham-gatkSNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
astatham-gatkSNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
89.7436
40400
astatham-gatkSNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
89.3617
50500
astatham-gatkSNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
89.3617
50500
astatham-gatkSNP*map_sirenhetalt
98.7500
97.5309
100.0000
69.1406
7927900
astatham-gatkSNP*segduphetalt
100.0000
100.0000
100.0000
96.6825
70700
astatham-gatkSNP*segdupwithalt*
0.0000
100.0000
00000
astatham-gatkSNP*segdupwithalthet
0.0000
100.0000
00000
astatham-gatkSNP*segdupwithalthetalt
0.0000
100.0000
00000
astatham-gatkSNP*segdupwithalthomalt
0.0000
100.0000
00000
astatham-gatkSNP*tech_badpromotershet
97.3333
94.8052
100.0000
51.6556
7347300
astatham-gatkSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPti*hetalt
99.8279
99.6564
100.0000
39.9586
580258000
astatham-gatkSNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
35.3312
205220500
astatham-gatkSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
21.9215
577257700
astatham-gatkSNPtidecoy*
0.0000
100.0000
00000
astatham-gatkSNPtidecoyhet
0.0000
100.0000
00000
astatham-gatkSNPtidecoyhetalt
0.0000
100.0000
00000
astatham-gatkSNPtidecoyhomalt
0.0000
100.0000
00000
astatham-gatkSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
46.6667
80800
astatham-gatkSNPtifunc_cdshomalt
99.9526
99.9052
100.0000
19.7136
52705527000
astatham-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
87.8049
51500
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
83.0986
1201200
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8976
99.7954
100.0000
42.9630
14633146300
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9417
99.8834
100.0000
46.5044
857185700
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.7778
95.6522
100.0000
90.3084
6636600
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
10100
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.0909
98.1982
100.0000
84.6695
436843600
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
10100
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3430
98.6945
100.0000
83.5150
378537800
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.0000
20200