PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80901-80950 / 86044 show all
qzeng-customSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.1039
60600
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
98.5507
97.1429
100.0000
93.0712
3413700
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_51to200het
90.9091
83.3333
100.0000
98.1685
51500
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
100.0000
00000
qzeng-customSNPtimap_l100_m0_e0hetalt
83.3333
71.4286
100.0000
89.8990
1041000
qzeng-customSNPtimap_l100_m1_e0hetalt
81.6327
68.9655
100.0000
88.0952
2092000
qzeng-customSNPtimap_l100_m2_e0hetalt
82.3529
70.0000
100.0000
88.3978
2192100
qzeng-customSNPtimap_l100_m2_e1hetalt
83.0189
70.9677
100.0000
87.9121
2292200
qzeng-customSNPtimap_l125_m0_e0hetalt
66.6667
50.0000
100.0000
95.0000
44400
qzeng-customSNPtimap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
87.5000
1681600
qzeng-customSNPtimap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
88.8889
1681600
qzeng-customSNPtimap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
88.8889
1681600
qzeng-customSNPtimap_l150_m0_e0hetalt
80.0000
66.6667
100.0000
96.8750
21200
qzeng-customSNPtimap_l150_m1_e0hetalt
75.0000
60.0000
100.0000
91.5094
96900
qzeng-customSNPtimap_l150_m2_e0hetalt
75.0000
60.0000
100.0000
92.6230
96900
qzeng-customSNPtimap_l150_m2_e1hetalt
75.0000
60.0000
100.0000
92.6829
96900
qzeng-customSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
qzeng-customSNPtimap_l250_m1_e0hetalt
40.0000
25.0000
100.0000
98.5294
13100
qzeng-customSNPtimap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
97.3333
23200
qzeng-customSNPtimap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
97.3684
23200
qzeng-customSNPtimap_sirenhetalt
86.0000
75.4386
100.0000
84.0467
43144100
qzeng-customSNPtisegduphetalt
100.0000
100.0000
100.0000
99.0868
20200
qzeng-customSNPtisegdupwithalt*
0.0000
100.0000
00000
qzeng-customSNPtisegdupwithalthet
0.0000
100.0000
00000
qzeng-customSNPtisegdupwithalthetalt
0.0000
100.0000
00000
qzeng-customSNPtisegdupwithalthomalt
0.0000
100.0000
00000
qzeng-customSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
41.1765
4104000
qzeng-customSNPtvdecoy*
0.0000
0.0000
100.0000
99.9990
00100
qzeng-customSNPtvdecoyhet
0.0000
100.0000
00000
qzeng-customSNPtvdecoyhetalt
0.0000
100.0000
00000
qzeng-customSNPtvdecoyhomalt
0.0000
0.0000
100.0000
99.9938
00100
qzeng-customSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
54.5455
1001000
qzeng-customSNPtvfunc_cdshomalt
99.8531
99.7066
100.0000
25.3758
16995168800
qzeng-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000